KEGG   Coccomyxa subellipsoidea: COCSUDRAFT_64204
Entry
COCSUDRAFT_64204  CDS       T02914                                 
Name
(RefSeq) nucleosome remodeling factor
  KO
K10752  histone-binding protein RBBP4
Organism
csl  Coccomyxa subellipsoidea
Pathway
csl03082  ATP-dependent chromatin remodeling
csl03083  Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:csl00001]
 09120 Genetic Information Processing
  09126 Chromosome
   03082 ATP-dependent chromatin remodeling
    COCSUDRAFT_64204
   03083 Polycomb repressive complex
    COCSUDRAFT_64204
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03036 Chromosome and associated proteins [BR:csl03036]
    COCSUDRAFT_64204
Chromosome and associated proteins [BR:csl03036]
 Eukaryotic type
  Nucleosome assembly factors
   Histone chaperones
    CAF-1
     COCSUDRAFT_64204
  Histone modification proteins
   HAT complexes
    HATB complex
     COCSUDRAFT_64204
   HDAC complexes
    Sin3A-HDAC complex
     COCSUDRAFT_64204
   Polycomb repressive complex (PRC) and associated proteins
    PRC2.1
     COCSUDRAFT_64204
    PRC2.2
     COCSUDRAFT_64204
  Centromeric chromatin formation proteins
   Kinetochore proteins
    MIS16-MIS18 complex
     COCSUDRAFT_64204
  Heterochromatin formation proteins
   Other heterochromatin formation proteins
    COCSUDRAFT_64204
  Chromatin remodeling factors
   NuRD complex
    COCSUDRAFT_64204
   NuRF complex
    COCSUDRAFT_64204
   NuRF complex (fruit fly)
    COCSUDRAFT_64204
SSDB
Motif
Pfam: WD40 CAF1C_H4-bd WD40_CDC20-Fz WD40_Prp19 Beta-prop_EIPR1 Beta-prop_CAF1B_HIR1 Beta-prop_RIG_2nd Beta-prop_EML_2 Beta-prop_TEP1_2nd WDR55 WD40_WDHD1_1st WD40_MABP1-WDR62_2nd EIF3I Beta-prop_EML WD_LRWD1 Beta-prop_WDR19_1st eIF2A ANAPC4_WD40 WD40_RFWD3 Beta-prop_IFT122_1st MIOS_WD40 Beta-prop_WDR90_POC16_2nd Beta-prop_SPT8
Other DBs
NCBI-GeneID: 17045393
NCBI-ProteinID: XP_005651922
JGI: 64204
UniProt: I0Z9Q9
LinkDB
AA seq 418 aa
MAREEEDYPDEMEERLVNEEYKIWKKNTPFLYDLVITHALEWPSLTVQWLPEKTVDKDKK
SAKQRLILGTHTSEGEQNYLMIAEVALPTSDSEAEAAQYDEERGEVGGFGAATGRVQVVQ
QINHEGEVNRARYMPQNPFLIATKTVSAEVFVFDYTKHPSKPSPNGICAPDLRLTGHRTE
GYGLAWSPFLEGHLLSGSDDAQICLWDICAATKGVSTLDARQIFRDHSGVVEDVAWHNHS
SNIFGSVGDDKQLIVWDTRQQAVGQAVMAHEAEVNCLGFNPFNEFVLATGSADKTVALHD
LRNLRRPLHTFEHHNEEVFQIGWSPKNETILASCGADRRLMVWDLSRIGEEQSPEDAEDG
PPELLFIHGGHTSKVSDFAWNPSDDWVVASVAEDNILQVWQMAENIYEDDFPTTAAAT
NT seq 1257 nt   +upstreamnt  +downstreamnt
atggcacgagaagaagaagattaccccgatgaaatggaggagaggctagtcaatgaagaa
tacaaaatctggaagaagaatacaccgttcttgtatgatctggtcatcacacatgctctg
gagtggcccagtcttacagtgcagtggctcccggagaagacagtggacaaagacaagaag
tcagcaaagcagcggctgattttgggcacgcacaccagcgagggggagcagaattacctg
atgatcgctgaggtggcactacccacgtctgactcagaggccgaggctgcgcagtatgac
gaggagagaggggaggtgggcggctttggcgcagccacaggccgagtgcaggtggtgcag
cagatcaatcatgagggggaggtgaatcgggcacggtacatgccgcagaaccccttcctc
atcgcaaccaagacagtctcggcggaggtctttgtcttcgactataccaaacacccctcc
aagccctcccccaacggcatatgtgccccggacctcagactcacaggtcacagaacagag
gggtatgggttggcgtggagcccctttctggaggggcaccttctgtcggggtcggatgat
gcgcagatctgcctctgggatatctgcgcggccaccaagggagtcagcacgctcgacgct
cgccagatctttagggaccacagcggtgttgtggaggatgtggcgtggcacaaccacagc
tccaacatctttggctctgtgggagacgacaagcagctcatcgtgtgggacacgcggcaa
caagctgtgggtcaggcggtgatggcgcatgaggcggaggtcaactgcctcggcttcaac
cccttcaatgagttcgtgctggcaaccggatcggccgacaaaacggtggcgctgcacgac
ctgcgcaacctgcggcggccgctgcacacgtttgagcaccacaacgaggaggtgttccag
atcgggtggagccccaagaacgagaccatcctcgcctcatgcggcgccgaccgccgcctc
atggtctgggacctctcgcgcatcggcgaggaacagtcgccggaggacgcggaggacggc
ccgcctgagctgctgttcatccacgggggccatacctccaaggtctctgactttgcctgg
aacccctctgatgactgggtggtcgcctcagtcgctgaagacaacatcctccaggtgtgg
cagatggcggagaacatttacgaggatgacttccccacaaccgctgcggcaacatag

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