Coccomyxa subellipsoidea: COCSUDRAFT_64204
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Entry
COCSUDRAFT_64204 CDS
T02914
Name
(RefSeq) nucleosome remodeling factor
KO
K10752
histone-binding protein RBBP4
Organism
csl
Coccomyxa subellipsoidea
Pathway
csl03082
ATP-dependent chromatin remodeling
csl03083
Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:
csl00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
COCSUDRAFT_64204
03083 Polycomb repressive complex
COCSUDRAFT_64204
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
csl03036
]
COCSUDRAFT_64204
Chromosome and associated proteins [BR:
csl03036
]
Eukaryotic type
Nucleosome assembly factors
Histone chaperones
CAF-1
COCSUDRAFT_64204
Histone modification proteins
HAT complexes
HATB complex
COCSUDRAFT_64204
HDAC complexes
Sin3A-HDAC complex
COCSUDRAFT_64204
Polycomb repressive complex (PRC) and associated proteins
PRC2.1
COCSUDRAFT_64204
PRC2.2
COCSUDRAFT_64204
Centromeric chromatin formation proteins
Kinetochore proteins
MIS16-MIS18 complex
COCSUDRAFT_64204
Heterochromatin formation proteins
Other heterochromatin formation proteins
COCSUDRAFT_64204
Chromatin remodeling factors
NuRD complex
COCSUDRAFT_64204
NuRF complex
COCSUDRAFT_64204
NuRF complex (fruit fly)
COCSUDRAFT_64204
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
WD40
CAF1C_H4-bd
WD40_CDC20-Fz
WD40_Prp19
Beta-prop_EIPR1
Beta-prop_CAF1B_HIR1
Beta-prop_RIG_2nd
Beta-prop_EML_2
Beta-prop_TEP1_2nd
WDR55
WD40_WDHD1_1st
WD40_MABP1-WDR62_2nd
EIF3I
Beta-prop_EML
WD_LRWD1
Beta-prop_WDR19_1st
eIF2A
ANAPC4_WD40
WD40_RFWD3
Beta-prop_IFT122_1st
MIOS_WD40
Beta-prop_WDR90_POC16_2nd
Beta-prop_SPT8
Motif
Other DBs
NCBI-GeneID:
17045393
NCBI-ProteinID:
XP_005651922
JGI:
64204
UniProt:
I0Z9Q9
LinkDB
All DBs
AA seq
418 aa
AA seq
DB search
MAREEEDYPDEMEERLVNEEYKIWKKNTPFLYDLVITHALEWPSLTVQWLPEKTVDKDKK
SAKQRLILGTHTSEGEQNYLMIAEVALPTSDSEAEAAQYDEERGEVGGFGAATGRVQVVQ
QINHEGEVNRARYMPQNPFLIATKTVSAEVFVFDYTKHPSKPSPNGICAPDLRLTGHRTE
GYGLAWSPFLEGHLLSGSDDAQICLWDICAATKGVSTLDARQIFRDHSGVVEDVAWHNHS
SNIFGSVGDDKQLIVWDTRQQAVGQAVMAHEAEVNCLGFNPFNEFVLATGSADKTVALHD
LRNLRRPLHTFEHHNEEVFQIGWSPKNETILASCGADRRLMVWDLSRIGEEQSPEDAEDG
PPELLFIHGGHTSKVSDFAWNPSDDWVVASVAEDNILQVWQMAENIYEDDFPTTAAAT
NT seq
1257 nt
NT seq
+upstream
nt +downstream
nt
atggcacgagaagaagaagattaccccgatgaaatggaggagaggctagtcaatgaagaa
tacaaaatctggaagaagaatacaccgttcttgtatgatctggtcatcacacatgctctg
gagtggcccagtcttacagtgcagtggctcccggagaagacagtggacaaagacaagaag
tcagcaaagcagcggctgattttgggcacgcacaccagcgagggggagcagaattacctg
atgatcgctgaggtggcactacccacgtctgactcagaggccgaggctgcgcagtatgac
gaggagagaggggaggtgggcggctttggcgcagccacaggccgagtgcaggtggtgcag
cagatcaatcatgagggggaggtgaatcgggcacggtacatgccgcagaaccccttcctc
atcgcaaccaagacagtctcggcggaggtctttgtcttcgactataccaaacacccctcc
aagccctcccccaacggcatatgtgccccggacctcagactcacaggtcacagaacagag
gggtatgggttggcgtggagcccctttctggaggggcaccttctgtcggggtcggatgat
gcgcagatctgcctctgggatatctgcgcggccaccaagggagtcagcacgctcgacgct
cgccagatctttagggaccacagcggtgttgtggaggatgtggcgtggcacaaccacagc
tccaacatctttggctctgtgggagacgacaagcagctcatcgtgtgggacacgcggcaa
caagctgtgggtcaggcggtgatggcgcatgaggcggaggtcaactgcctcggcttcaac
cccttcaatgagttcgtgctggcaaccggatcggccgacaaaacggtggcgctgcacgac
ctgcgcaacctgcggcggccgctgcacacgtttgagcaccacaacgaggaggtgttccag
atcgggtggagccccaagaacgagaccatcctcgcctcatgcggcgccgaccgccgcctc
atggtctgggacctctcgcgcatcggcgaggaacagtcgccggaggacgcggaggacggc
ccgcctgagctgctgttcatccacgggggccatacctccaaggtctctgactttgcctgg
aacccctctgatgactgggtggtcgcctcagtcgctgaagacaacatcctccaggtgtgg
cagatggcggagaacatttacgaggatgacttccccacaaccgctgcggcaacatag
DBGET
integrated database retrieval system