Coccomyxa subellipsoidea: COCSUDRAFT_65132
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Entry
COCSUDRAFT_65132 CDS
T02914
Name
(RefSeq) hypothetical protein
KO
K19612
2',5'-phosphodiesterase [EC:
3.1.13.4
3.1.4.-]
Organism
csl
Coccomyxa subellipsoidea
Brite
KEGG Orthology (KO) [BR:
csl00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
csl03019
]
COCSUDRAFT_65132
03029 Mitochondrial biogenesis [BR:
csl03029
]
COCSUDRAFT_65132
Enzymes [BR:
csl01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
COCSUDRAFT_65132
Messenger RNA biogenesis [BR:
csl03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
COCSUDRAFT_65132
Mitochondrial biogenesis [BR:
csl03029
]
Mitochondrial DNA transcription, translation, and replication factors
Mitochondrial transcription and translation factors
Other mitochondrial DNA transcription and translation factors
COCSUDRAFT_65132
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Sua5_yciO_yrdC
PDE12-like_N
Exo_endo_phos
IG_AIR9
DUF1487
Motif
Other DBs
NCBI-GeneID:
17043173
NCBI-ProteinID:
XP_005649715
JGI:
65132
UniProt:
I0Z3F2
LinkDB
All DBs
AA seq
963 aa
AA seq
DB search
MICSKLLPRTNILHSTIPYALWSRRVCSKHSLFKAASSSFQTVDMQQVVVKSFPAEENLQ
IELMVGGKQRFMDRPKTEPLERTLARIQKNAAPVPDKKAKRSPSQRKTQAEVSSITVELY
EDMLEGRQVAGSIPNAEAWQPGRILQVGETTFSIILNPPAADKLQVYGRPMVGYPLCPTV
QVMFSDEGDCRWQWYRSAERTAVAAASVNRSRSPSPRRRQPLPDSETEGTDAAWQPLPFA
QERVYSPIAEDAGHRLRLQCTPWRGSGSAHGEAASGKPVTVETDPVTAGPAFTAAAQRQA
HTSTPLAPPGVRVVTYNILADQYASTDYAQEHLFAYCPREYMVPEYRRPLIMQEILGYNA
DVICLQEVDGKAFTTFFQPLMSHAGFEGQYTNKAGETAEGSAMFYRRSRFELVHKVDIPM
KNVFASLLIGDARSLSLHAQFLPLLHASPHLVQALQRVSTVAQLSVLAPRQPAPADEGPL
CVVNTHLFFHPKASHIRTLHAAAMLAEAHAVMQEVGQQLGQTPALLFCGDLNSDKNDGIS
GAVELLQKGSLPPDHWDWAWGADFRFVKDGNAGEDTGDHASTSGSKPGNRQAPLLTMKMP
FSLRSADGGRYEYTNYVKGYSGLLDYVFFQPERMCAREALPLPGAAELAGWLPSQRFPSD
HLSLVFDLQWLPSEDAPATAAGPTGTAEHAESRSASSAPAELGSEQQRRGQPAGADAAGG
SSENGSASAFAWADGMLARGDGAEAAARPRGCVMPADESGAAVAAEALRRGDVVAVPTDT
LYGLAACANSEQGVGRLYAIKHRQAHVPLAICVADVAVVEQYGMCAHLPQGLLDDLLPGP
VTVLLARRPDAALSAALNPGVQTIGIRVPDSAFMLEACRQHGRAVALTSANISGAISPTS
IHDFEQLWPQCAAVFDAGIVGADRAGSTVVDLSLEGSFRILREGSHPSHVRQVLTEKYGI
AEQ
NT seq
2892 nt
NT seq
+upstream
nt +downstream
nt
atgatctgttccaaattgctacctagaactaacattctgcattccactattccttacgct
ctttggagccgacgtgtgtgctccaagcatagcctgttcaaagcagcttccagtagtttc
cagacagtagacatgcagcaggtagtggtgaagtcatttccggcggaggagaacctccag
atagagctgatggttggtgggaagcagcgcttcatggacaggcccaagacagagcccctg
gaacggactcttgctcgcattcagaagaatgctgcaccggtgccagataagaaggcgaaa
cggagcccctcgcagagaaaaacacaagcggaagttagcagcattacagtggagctatat
gaggatatgctggagggcaggcaagtggcagggagcattcctaatgctgaagcctggcag
cctggtcgcatcttgcaagtgggagagaccacgttctcaatcatcttgaatcctcctgca
gcagacaagctccaggtatatgggaggccaatggtgggctaccctctctgtccgacagtg
caggtcatgttctctgatgagggagactgcagatggcagtggtatcggtcagcagagagg
acagctgtcgcggctgcatcagtgaacagaagcagatctccatcaccccgaaggaggcag
cctttgccggactcagaaacagaaggcactgatgcagcgtggcagccacttccgtttgca
caagagagggtgtactcccctattgctgaggacgctggtcacaggctgcgcctccagtgc
accccctggaggggaagtggcagcgctcatggcgaggcagcctcgggaaagccagtgact
gtggagacagatccagtgacggcagggccagcatttacagccgctgcgcagcgccaggcg
cacaccagcacccccttggcgccccctggagtcagggtagtgacctacaacatcctggcc
gaccagtatgcctccacagactacgcgcaggagcacctgtttgcctactgccccagagag
tacatggtaccggagtacaggcggccgctgatcatgcaggagatcctgggctacaatgca
gacgtcatctgcctgcaggaggtggatgggaaggctttcaccaccttcttccagcccctc
atgagccatgcaggttttgaggggcagtacacaaacaaggctggggagactgcagagggc
tctgccatgttctaccgacggtcgcgctttgagcttgtgcataaagtcgacatcccgatg
aaaaatgtcttcgcctcgctgctgatcggtgatgccaggagcctctcgctccatgcacag
ttcttgccactgctacatgcctcgccccaccttgtgcaggcgctgcaaagggtgagcaca
gttgcgcagttgtcagtactggcgcccaggcagccagccccagccgacgagggaccgctg
tgcgtggtgaacacccacctgttcttccatcccaaggcttcccacatccgcacactccat
gcagccgccatgctggcagaggcacatgcagtcatgcaggaggttggtcagcagctgggg
cagacgcctgcactgctattctgcggcgacttgaactcagacaagaacgacggcatatca
ggcgctgttgagctgctgcaaaagggaagcctgccgcctgaccactgggactgggcttgg
ggcgccgacttccgctttgtcaaggacggaaatgctggcgaggacaccggcgatcatgct
tcaacctccggctctaagcctggcaacaggcaggcacctctcctgaccatgaagatgccg
ttcagcctgcgaagtgcagacggcggccgttatgagtacacaaactacgtgaagggctac
agcgggctgctggactatgtgtttttccagccggagcgcatgtgcgcgcgcgaggcgctg
ccgctgcctggcgcggccgagctggccggctggttaccctcccagcgcttcccctcggac
cacctctcccttgtcttcgacctgcaatggctgccctcggaggacgcccctgcgacagca
gccgggcctactggaacagctgagcatgcagaaagccgcagcgccagcagtgcaccagca
gagcttggatcggagcagcagcgtagaggccaacctgcaggggcagatgcggcgggtggt
tccagcgaaaatggcagtgcgtcagcttttgcgtgggctgatgggatgttggcgcggggg
gatggagcggaggcggcggcgcggccgagagggtgtgtgatgccggcggacgagagcggc
gcggcggtggctgccgaggcgctgagaagaggagatgtggtggctgtgcccactgacacg
ctgtacggcctggcagcctgcgccaacagcgagcagggcgtcgggaggttgtatgccatc
aagcacaggcaggcgcatgtgccgctggcgatctgcgtggctgacgtggcggtggtggag
cagtatggcatgtgcgcgcacctgccgcagggcctgctggatgacctgctgcccgggccg
gtgactgtgctgctggcgcggcgaccggatgcagcgctctctgctgctctgaatcccggt
gtacagacgattggaatacgggtaccggacagtgcattcatgctggaggcctgcaggcag
catgggagagcggttgcccttacatcagccaacattagcggtgcaatcagtcccacctcc
atccatgactttgagcagctgtggccgcagtgtgcagccgtctttgatgcaggcattgtg
ggcgcagacagagcggggtctacagtggttgatctatctctcgagggaagcttcaggatt
ttgagggaggggtctcatccttcccatgttcgtcaagtactcacggagaagtatggtatt
gccgaacagtaa
DBGET
integrated database retrieval system