Coccomyxa subellipsoidea: COCSUDRAFT_65263
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Entry
COCSUDRAFT_65263 CDS
T02914
Name
(RefSeq) DEAD-box RNA helicase
KO
K12823
ATP-dependent RNA helicase DDX5/DBP2 [EC:
5.6.2.7
]
Organism
csl
Coccomyxa subellipsoidea
Pathway
csl03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
csl00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
COCSUDRAFT_65263
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
csl03041
]
COCSUDRAFT_65263
03009 Ribosome biogenesis [BR:
csl03009
]
COCSUDRAFT_65263
Enzymes [BR:
csl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
COCSUDRAFT_65263
Spliceosome [BR:
csl03041
]
Complex A
U1 snRNP components
U1 related factors
COCSUDRAFT_65263
Complex B
COCSUDRAFT_65263
Ribosome biogenesis [BR:
csl03009
]
Eukaryotic type
Pre-60S particles
Helicases
COCSUDRAFT_65263
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Utp25_C
HAD_Pex22
Motif
Other DBs
NCBI-GeneID:
17043474
NCBI-ProteinID:
XP_005650016
JGI:
65263
UniProt:
I0Z4A3
LinkDB
All DBs
AA seq
461 aa
AA seq
DB search
MPFEKNFYVEHPAVQSRSLEEVKAYRHAREIHIDGHDIPKPVTTFEEASFPEYVLTEVKH
AGFTQPTPIQAQGWPMALLGRDLVGLAETGSGKTLAYLLPAIVHINAQPYLEPGDGPIVL
VLAPTRELAVQIQQECAKFGTSSRIKNTCVYGGAPKGPQMRDLRNGVEIVIATPGRLIDM
LESRVTNLRRVTYLVLDEADRMLDMGFEPQIRNIVSQIRPDRQTLLWSATWPKDVQSIAS
AFLRDFYQVTIGSRDLKANHLIDQHFQFLSEDDKYRALSRLLEREMDGSRLLIFCETKRG
CDAVTRQLRTEGWPALSIHGDKSQQERDWVLAEFKAGKSPIMLATDVAARGLDVKDIKMV
VNYDMPNTAEDYVHRIGRTARAGASGLAVSFFTSANGRMARQIVDILSEAHQTVPDQLRQ
YASVAGGGGGSNFRNRGRGFGGGGFGGRGGGGSFGGGGFRR
NT seq
1386 nt
NT seq
+upstream
nt +downstream
nt
atgcccttcgagaagaacttttatgtggagcatcccgctgtgcaatccaggagtttagaa
gaggtcaaggcgtatcgacatgcaagagagattcatatcgatggccacgatattccaaaa
cctgtcacaactttcgaggaagcatccttcccagaatacgtgctgacggaggtgaagcac
gctggcttcacgcagccaaccccaatccaggctcagggatggcccatggcactgctggga
cgggacctggtgggtctagcagagactggcagcggcaagacgctcgcttatctgctgcct
gcaattgtgcacatcaatgcgcagccatacctggagcctggcgacgggcctattgtgctg
gtgctggctcccacccgcgagcttgcagtgcagatccagcaggagtgcgctaaatttggg
acatcgtcgcgcatcaagaacacgtgtgtgtatggaggagcgcccaaggggccgcagatg
agggatctgaggaacggagtggagattgtgattgccacgccaggccgcctgatcgacatg
ctagaatcgcgggtgaccaacctcaggcgggtgacatacctggtcctggacgaggccgac
cgcatgctggacatgggattcgagccccagatccgcaacattgtgtcacagatccggcct
gaccggcagacgctgctgtggagcgccacatggcccaaggatgtgcagagcatcgcgagc
gcatttctgcgcgacttctaccaagtcaccatcggctcccgcgacctcaaggcaaaccac
ttgatagatcagcacttccagttcctgagtgaggacgacaagtaccgggcgctgagccgg
ctgctggagcgcgagatggacggctcgcggctgctcatcttctgcgagaccaagcgcggc
tgcgacgctgtcactcgccagctgcgcaccgagggctggcccgccctctccatccacggc
gacaagtcccagcaggagcgcgactgggtgctggcggagttcaaagctggcaagagccca
atcatgctggcgaccgacgttgcagcgcggggacttgacgtcaaggacatcaagatggtg
gtcaactatgacatgcccaacaccgcggaggactacgtgcaccgtatcggccgcaccgcg
cgcgcgggggcgagcggcctggccgtcagcttcttcacgagcgccaacggccgcatggcg
cgccagatcgtggacatcttgtccgaggcccaccagaccgtgccagaccagctgcgccag
tacgcgtccgttgccggcggcggcggcggcagcaatttccgtaaccgcggtcgcgggttt
ggcggtgggggattcgggggccgaggagggggcggcagctttggcgggggtggattcagg
cgatga
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integrated database retrieval system
