KEGG   Coccomyxa subellipsoidea: COCSUDRAFT_68029
Entry
COCSUDRAFT_68029  CDS       T02914                                 
Name
(RefSeq) PIN domain-like protein
  KO
K04799  flap endonuclease-1 [EC:3.1.-.-]
Organism
csl  Coccomyxa subellipsoidea
Pathway
csl03030  DNA replication
csl03410  Base excision repair
csl03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:csl00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    COCSUDRAFT_68029
   03410 Base excision repair
    COCSUDRAFT_68029
   03450 Non-homologous end-joining
    COCSUDRAFT_68029
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:csl03032]
    COCSUDRAFT_68029
   03400 DNA repair and recombination proteins [BR:csl03400]
    COCSUDRAFT_68029
  09183 Protein families: signaling and cellular processes
   04147 Exosome [BR:csl04147]
    COCSUDRAFT_68029
DNA replication proteins [BR:csl03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   Other elongation factors
    COCSUDRAFT_68029
 Prokaryotic type
   Elongation factors (archaeal)
    Other elongation factors
     COCSUDRAFT_68029
DNA repair and recombination proteins [BR:csl03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     COCSUDRAFT_68029
Exosome [BR:csl04147]
 Exosomal proteins
  Exosomal proteins of haemopoietic cells  (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
   COCSUDRAFT_68029
SSDB
Motif
Pfam: XPG_I XPG_N 5_3_exonuc
Other DBs
NCBI-GeneID: 17037164
NCBI-ProteinID: XP_005643778
JGI: 68029
UniProt: I0YLG5
LinkDB
AA seq 384 aa
MGIKNLTKLLGDHAPGCCKEQKVENYFGRKVAVDASMHIYQFLVVVGRTGDQTLTSESGD
VTSHLQGMFFRTAKMLEVGMKPVYVFDGKPPALKKEELSRRVERRGDATDLLTEAKETGA
DADIEKYSKRTVRVTPQHNEECRRLLRLMGVPVVEAPSEAEAQCAQMCKEGLVYGIASED
MDSLTFATPKLIRNLMKPQTQNVPINEYDYDKVLEGLNLTSDQFVDLCILCGCDYCGTIK
GIGGVTALKLIQKHKRLEDVLASMEGGRYEIPDPFPFEEARRLFKEPDVLKGDSMPQLKW
TTADEEGLVQFLVGDKSFNEDRVRKAVQRVNAAKSKSTQGRLESFFGPVSIKTSDTGKRK
EPATGKGKGQAAKKGKSGVGVKKK
NT seq 1155 nt   +upstreamnt  +downstreamnt
atggggatcaagaatctgacgaaattgctgggtgatcatgctccgggatgctgtaaggag
cagaaggtcgaaaactattttggccgaaaagtagctgttgatgcgtccatgcacatctac
caatttctggttgtggtgggaaggactggcgaccaaaccctgaccagcgaatcaggcgat
gtcaccagtcacctgcagggaatgttcttcaggacagcaaaaatgttggaagtcggcatg
aagccagtgtatgtctttgatgggaagccaccggccttgaaaaaggaggagctgtctagg
agggtggagaggaggggtgatgcaacggatttgctcacagaagccaaggagactggtgca
gatgcagacattgagaaatacagcaagaggacagtgagagtgacgccgcagcacaatgag
gaatgccgcagactgctgcgcctgatgggagtgcctgtcgtggaagcaccttcagaagca
gaggcgcagtgcgcgcagatgtgcaaggaagggctggtgtacgggattgcatcagaagac
atggattcattgacatttgcaactcccaagctcatacggaatctcatgaagcctcagacg
cagaatgtgccaatcaacgaatacgattatgacaaggtgcttgagggcttgaatctgacc
agcgatcagtttgtggacctgtgcattctgtgtggatgcgactactgtggcacgatcaag
ggcattggaggcgtgactgctctgaagctcatccagaagcacaagcggctggaggatgtg
ctggccagcatggagggcggccgctacgagattccagaccccttccccttcgaggaagca
cgccgcctgttcaaggagccggatgtcctgaagggagacagcatgcctcaactgaagtgg
acaacggctgatgaggagggcctggtgcagtttctggttggggacaagagcttcaacgag
gacagagtcaggaaagcggtgcagcgcgtgaatgcggcaaagtcaaagtccacacaagga
cgattggagagcttcttcggccccgtaagcatcaagacttccgacacagggaagcgcaag
gaaccagccacaggaaagggcaagggtcaagcggcgaagaagggcaagtcaggtgtgggc
gtcaagaagaagtga

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