Campylobacter subantarcticus LMG 24374: CSUB8521_0012
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Entry
CSUB8521_0012 CDS
T03571
Symbol
recJ
Name
(GenBank) single-stranded DNA-specific exonuclease
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
csm
Campylobacter subantarcticus LMG 24374
Pathway
csm03410
Base excision repair
csm03430
Mismatch repair
csm03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
csm00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
CSUB8521_0012 (recJ)
03430 Mismatch repair
CSUB8521_0012 (recJ)
03440 Homologous recombination
CSUB8521_0012 (recJ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
csm03400
]
CSUB8521_0012 (recJ)
DNA repair and recombination proteins [BR:
csm03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
CSUB8521_0012 (recJ)
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
CSUB8521_0012 (recJ)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
CSUB8521_0012 (recJ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RecJ_OB
DHH
DHHA1
Motif
Other DBs
NCBI-ProteinID:
AJC89918
UniProt:
A0A0A8H722
LinkDB
All DBs
Position
10693..12264
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AA seq
523 aa
AA seq
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MLNKAKIKEILQQRFVNDIHVKLCDLPMPSCLKDIYKGALRIKEAIEKNQKLAIVGDYDV
DGVISCVILSEFFDDIGFDYVVKIPNRFKDGYGLNEEIINELDGVDLIITVDNGIAAFEA
AELCLQKGIDLIITDHHMPSATLPKAYAIINPKQHDCEFPDIEICGAQVAWYLVAAIKEV
CKINYNMCKFIELLSIAIIADMMELRDLNRALVRKGIECINDSKRVAFKAIKRHFGKDKF
ELDNISFLIAPLINSAGRMDDAIISYKFLHSKNIDEVMGYLEQIITYNNSRKDEERELFK
QCLEQVDENDPVIIVNGQNWHEGVLGIVASRLAKHFNKPAFVFSECEQKAKASVRSVGRI
DILNVIEQAKEFVLSYGGHKGAAGVLIELEKFSVFKSKLYEICQNIPKDDFYNNDEVLGS
IDPNEVDFELLEILEFFEPFGHKNPRPYFKFDKLFVKNKRKLGKDENHIKLILTQGNKTL
EALFFNFEYEPELGESIDLIASVSKNNFRGLITPQLTIKEILR
NT seq
1572 nt
NT seq
+upstream
nt +downstream
nt
atgttaaataaagctaaaataaaagaaattttacaacaacgctttgtcaatgatattcat
gtaaagctatgtgatttacctatgccatcttgtttaaaagatatttataagggtgctttg
cgtattaaagaagcgattgaaaaaaatcaaaagcttgctattgtgggggactatgatgta
gatggggtgatttcttgtgtgattttatctgaattttttgatgacattggttttgattat
gtggtaaaaattccaaatcgctttaaagatggatatggtctaaatgaagaaatcatcaat
gaacttgatggagtggatttaattatcactgtagataatggtatagcagcatttgaagca
gcagaactttgtttacaaaaaggaattgatttaatcattaccgatcatcacatgccttct
gctactttgccaaaagcttatgcgattattaaccctaaacagcatgattgtgaatttcct
gatattgaaatttgtggcgctcaagtggcttggtatttagtcgctgcgataaaagaagtg
tgtaagattaattacaatatgtgtaaatttatagagcttttatcgattgcaattattgca
gatatgatggaacttagagatttaaacagagccttagttagaaaaggcatagagtgtatt
aatgattcaaaacgagtggcatttaaagcgattaagcggcattttggtaaggataaattt
gaacttgataatattagctttttaatcgcacctttgattaatagtgcaggtagaatggat
gatgcgattatttcttataaatttttacattctaaaaatattgatgaagttatggggtat
ttagagcaaatcattacttataataatagtcgtaaagatgaagagcgtgagctttttaaa
caatgtttagaacaagttgatgaaaatgatcctgtgattattgtcaatggtcaaaattgg
catgagggtgttttgggtatagttgcaagtcgtttagcaaagcattttaataaacctgct
tttgttttttcagaatgtgagcaaaaggctaaagccagcgttagaagtgtgggtagaata
gatattttaaatgttatagaacaagctaaagaatttgttttaagctatggcgggcataaa
ggtgcagctggagttttaatagagcttgaaaaatttagtgtttttaaaagtaagctttat
gaaatttgtcaaaatatccctaaagatgatttttataataatgatgaggttttaggtagt
attgacccaaatgaagttgattttgagcttttagagatattagaattttttgaacctttt
ggacataaaaacccaaggccttattttaaatttgataagctttttgtgaaaaataaaaga
aagttaggtaaagatgaaaaccatataaagcttattttaactcagggaaataaaacttta
gaagctttattttttaattttgaatatgagccagagcttggagaaagcattgatcttata
gctagtgtttctaaaaataactttagaggattaatcacccctcaacttactatcaaagaa
attcttagataa
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