Campylobacter subantarcticus LMG 24374: CSUB8521_0481
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Entry
CSUB8521_0481 CDS
T03571
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase, beta subunit
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
csm
Campylobacter subantarcticus LMG 24374
Pathway
csm03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
csm00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
CSUB8521_0481 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
csm03021
]
CSUB8521_0481 (rpoB)
03400 DNA repair and recombination proteins [BR:
csm03400
]
CSUB8521_0481 (rpoB)
Enzymes [BR:
csm01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
CSUB8521_0481 (rpoB)
Transcription machinery [BR:
csm03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
CSUB8521_0481 (rpoB)
DNA repair and recombination proteins [BR:
csm03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
CSUB8521_0481 (rpoB)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_2
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_45
RNA_pol_Rpb2_1
Motif
Other DBs
NCBI-ProteinID:
AJC90357
UniProt:
A0A0A8H8P0
LinkDB
All DBs
Position
453222..457355
Genome browser
AA seq
1377 aa
AA seq
DB search
MLNSQSGNRLRIDFSNVPQQIDIPNLLQLQKKSFDYFLNIDAKNSESGIEKVFKSIFPIH
DPQNRLSLEYVSSEVGKPKYTIRECMERGLTYSVNLKMKIRLTLHEKDEKTGEKIGIKDI
KEQEIYIREIPLMTDRISFIINGVERVVVNQLHRSPGVIFKEEESSTVANKLVYTAQIIP
DRGSWLYFEYDAKDVLYVRINKRRKVPITILFRALGYKKQDIIKLFYPIQTIYVKKDKFL
TEFNPNDFLDRVEYDLKDEKGNVIHQAGKRMTKKKAEQLVKDGVKWVEYPVEILTNRYLA
NPIINKETGEVLYDSLTLLDEGKLAKIKEEKQFDIANDLANGVDAAIINSFIQDNETLKL
LKQTENIEDENDLAAIRIYKVMRPGEPVVKDAAKAFVNDLFFNSERYDLTKVGRMKMNHK
LGLDTPEYVTVLTNEDIVKTAKYLIKVKNGRGYIDDRDHLGNRRIRSIGELLANELHVGL
TKMQKSIRDKFTALNTDIDKVMPYDLINPKTITVTIMEFFTGGQLSQFMDQTNPLSEVTH
KRRLSALGEGGLVKERAGFEVRDVHATHYGRICPVETPEGQNIGLINTLSTYAKVNDLGF
VEAPYKKVENGKVSNEIVYLTATQEEGLVIAAASTKIDDKGNIIEEFVEARQDGETILAR
REEVHLIDLCSGMIVGVAASLIPFLEHDDANRALMGSNMQRQAVPLLTAQAPIVGTGMEK
IIARDAWEAIKTKRAGIVEKVDNKNIFILGEDENGPFIDHYKMEKNLRTNQNTTFIQHPI
VKKGDFVQAGQIIADGPSMDQGELAIGKNALIAFMPWHGYNYEDAIVISEKILREDVFTS
VHIYEKEVEARELKDGVEEITKDIPNVKEEELAHLDESGIAKIGTHIKPGMILVGKVSPK
GEVKPTPEERLLRAIFGEKAGHVVNKSLYATASLEGVVVDVKIFTKKGYEKDARAIKAYD
DEKLNLEKEHHDRLLMMDREETLRVCSLLSKSPLNSDEEINGVKYKKGAKVEISELEKIN
RFALNSLVKAYSKEVQKEYDDLKNHFQNEKKKLKIEHDEKLEILEKDDILPSGVVKLIKV
YIATKRKLKVGDKMAGRHGNKGIVSNIVPEVDMPYLPDGRPIDIALNPLGVPSRMNIGQI
LESHLGIVGMRLGDQIQEIFDKKQKDFIKQLRAKILEICNVSRLTLEKKLVESLNDDQLI
AYARDWAKGVKFATPVFEGVTVEEFGKLFEMAKIAMDGKSELYDGRTGEKMAERVHVGCM
YMLKLHHLVDEKVHARSTGPYSLVTQQPVGGKALFGGQRFGEMEVWALEAYGAAHTLREM
LTIKSDDVEGRFSAYKALTKGENVPATGIPETFFVLTNELKSLALDVEIFDKDENNE
NT seq
4134 nt
NT seq
+upstream
nt +downstream
nt
atgttaaattcacaatcaggaaatcgtttaagaatagacttctcgaatgttccacaacaa
atagacattccaaatttattacaattacaaaagaaaagttttgattattttttaaatata
gacgcgaaaaattcagaaagtggaattgaaaaagtatttaaatctatttttccaattcat
gatccacaaaatagattaagtttagaatatgtaagtagcgaagtaggtaaacctaagtac
actattagagaatgtatggaaagggggttgacttattctgtaaatttaaaaatgaaaatc
cgtttaactttgcatgaaaaagatgaaaaaacgggtgaaaaaattggtataaaagatatt
aaagagcaagaaatttatattagagaaattcctttaatgacagatagaatttcttttatt
atcaatggagtagaaagggttgtagttaatcaacttcatagaagtccaggtgttattttc
aaagaagaagaaagttctactgttgcaaataaattagtatatacagctcaaattatacca
gatcgtggttcttggctttattttgaatacgatgctaaagatgtactttatgtgcgtatt
aataaaagaagaaaagtgcctattacaattttatttagagcgcttggttataaaaaacaa
gatattataaaattattctaccctatacaaactatttatgtaaaaaaagataaattctta
actgaatttaatccaaatgactttttagatagagttgaatatgatttaaaagatgaaaaa
ggtaatgtaattcatcaagctggtaaaagaatgacaaagaaaaaggctgagcagcttgta
aaagatggtgttaaatgggttgaatatccggttgaaattttaaccaacagatatttagct
aatccaattattaataaagaaactggtgaagttttatatgattctttaacgctattagat
gaaggaaaactagcaaaaattaaagaagaaaaacagtttgatattgcaaacgatttagct
aatggagtagatgctgctattatcaattctttcattcaagataatgaaactttaaaatta
ttaaaacaaacagaaaatatagaagatgaaaatgatttagcagctattagaatttataaa
gtaatgagaccaggcgagcctgtggtaaaagatgctgcaaaagcttttgtaaatgattta
ttttttaattctgaaagatatgatctaacaaaagttggtcgtatgaaaatgaatcacaaa
ttaggtttagatacgcctgaatatgttacggttttaactaatgaagatatagtcaaaact
gcaaaatatttaattaaagtaaaaaatggcagaggttatattgatgatagagatcattta
ggtaatcgtcgtattagatcaattggagaacttttagctaatgagcttcatgtgggtctt
actaaaatgcaaaaatctattagagataaatttacagctttaaatacagatattgacaaa
gtaatgccttatgatttaattaatcctaagacaattactgtaacaattatggaatttttt
actggaggtcaattatctcaatttatggatcaaacaaacccattaagtgaagtgactcat
aagcgtcgtttatctgcacttggtgaaggtggtttagtaaaagaaagagcaggttttgaa
gtgcgtgatgtacacgcaacacattatggaagaatttgtcctgttgaaactccagaaggt
caaaatattggtttgattaatacgctttcaacttatgctaaagtaaatgatttgggtttt
gttgaagcaccttataagaaagtagaaaatggtaaagtaagcaatgaaatcgtttattta
actgctactcaagaagaaggtttagtgattgcagcagcttcaactaaaatcgatgacaaa
ggtaatattattgaagaatttgttgaagctagacaagatggtgaaacaatcttagcaaga
agagaagaagtgcatttaattgacctttgttctggtatgatagtaggggttgcagcttct
cttattccgtttttggaacatgatgatgcaaatagggctttaatgggttcaaatatgcaa
cgtcaagcagtacctttactaactgcacaagctcctatagttggtactggtatggaaaaa
atcattgctcgcgatgcgtgggaagcgatcaagactaaaagagcaggaattgtagaaaaa
gttgataataaaaatattttcattttaggtgaagatgaaaatgggccatttattgatcat
tataaaatggagaaaaatttaagaaccaatcaaaatacaacctttattcaacatcctata
gtaaaaaaaggtgattttgttcaagcaggtcaaatcattgcagatggtccaagtatggat
caaggcgaacttgctattggtaaaaatgccttaattgcatttatgccatggcatggctat
aattatgaggatgcgattgttattagtgaaaaaatcttgcgtgaagatgtctttactagt
gtgcatatttatgaaaaagaagtggaagctagagagcttaaagacggtgttgaagaaatc
actaaagatattccaaatgtaaaagaagaggaattagcgcatcttgacgaaagtggtatt
gcaaaaataggtactcacattaagccgggtatgattttagtaggtaaggtttcgcctaag
ggtgaggtaaaacctacgcctgaagagagattgttaagagcgatttttggtgaaaaagcg
ggtcatgtggtaaataaatctttatatgcaactgcatcactagaaggggttgtggttgat
gtaaaaatctttaccaaaaaaggttatgaaaaagatgctcgtgctataaaagcttatgat
gatgaaaaattaaatcttgagaaagaacatcatgatagacttttgatgatggatagagaa
gaaaccttaagagtatgttctttactttctaaatcgcctttaaattcagatgaagaaatt
aatggagttaaatataaaaaaggtgctaaagtggaaataagtgaattggaaaaaattaat
cgttttgctttaaattctttagttaaagcttattccaaagaagtacaaaaagaatatgat
gatttaaaaaaccatttccaaaatgagaagaaaaaactcaaaattgagcatgatgaaaaa
ttagaaattttagaaaaagatgatattttaccaagtggagtagtaaaacttataaaagta
tatattgctaccaaaagaaagcttaaggttggagataaaatggctggacgccatggaaat
aaaggtatagtttcaaatatcgttcctgaagttgatatgccatatttacctgatggaaga
cctattgacatagctttaaatcctttgggtgttccaagtcgtatgaatattggccaaatt
cttgaaagccacttgggtatagttggcatgagacttggtgatcaaattcaagaaatattt
gacaaaaaacaaaaagattttatcaaacaattgcgtgcaaaaattcttgaaatttgtaac
gtgtcaagattgactttagaaaagaaacttgtagaaagtttaaatgatgatcaattaatt
gcctatgcaagagattgggctaaaggtgttaaatttgcaactcctgtttttgaaggtgta
actgttgaagaatttggcaagctttttgaaatggcaaaaatagctatggatggaaaaagc
gagctttacgatggaagaaccggtgagaaaatggcagagcgtgtacatgttggatgtatg
tatatgcttaagctacaccacttagtagatgaaaaagtgcatgcaagaagtaccgggcct
tacagccttgtaacacaacagccagttggtggtaaagcattatttggtggacaaagattt
ggtgagatggaggtttgggctcttgaagcttatggagcagctcacactctaagagaaatg
ctaaccataaaatctgatgatgttgagggtagatttagtgcttataaagctttaacaaaa
ggtgagaatgttccagcaacaggtattccagagacattctttgtacttacaaatgaatta
aaatctcttgctttagatgttgagatttttgataaggatgagaataatgagtaa
DBGET
integrated database retrieval system
