Campylobacter subantarcticus LMG 24374: CSUB8521_0506
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Entry
CSUB8521_0506 CDS
T03571
Symbol
rho
Name
(GenBank) transcription termination factor
KO
K03628
transcription termination factor Rho
Organism
csm
Campylobacter subantarcticus LMG 24374
Pathway
csm03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
csm00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CSUB8521_0506 (rho)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
csm03021
]
CSUB8521_0506 (rho)
03019 Messenger RNA biogenesis [BR:
csm03019
]
CSUB8521_0506 (rho)
Transcription machinery [BR:
csm03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
CSUB8521_0506 (rho)
Messenger RNA biogenesis [BR:
csm03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
CSUB8521_0506 (rho)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
AAA_25
Spore_III_AA
Mor
OB_RNB
ATPase_2
AAA
AAA_22
AAA_16
Motif
Other DBs
NCBI-ProteinID:
AJC90377
UniProt:
A0A0A8H8R7
LinkDB
All DBs
Position
complement(487369..488670)
Genome browser
AA seq
433 aa
AA seq
DB search
MENTKEKKHQRTHIPVEGYKIEDLKLLDLESLVKIANEAEIENPREFRRQDLIFEILKAQ
TKKGGFILFTGILEISPDGYGFLRGMDSNLSDSVNDAYVSNSQIRKFALRVGDIVTGQVR
EPKDQEKYYALLKIEAINYLPLKEARERPLFDNLTPIFPTEKIKLEYDPLKLTGRMLDLF
APIGKGQRSLIVAPPRTGKTELMKELATAIAKNHPEAHLIVLLVDERPEEVTDMQRCVKG
EVFSSTFDLPAYNHVRVAELVIEKAKRMVETGKDVVILLDSITRLARAYNTATPSSGKVL
SGGVDANALHKPKRFFGAARNIEHGGSLTIIATALIETGSRMDEVIFEEFKGTGNSEIVL
DRNISDRRIYPAINIIKSGTRKEELLQGVEKLQKIWAIRSAISQMDDIEALKFLYSKMLK
TKSNEELLSIMNE
NT seq
1302 nt
NT seq
+upstream
nt +downstream
nt
atggaaaatactaaagaaaaaaaacaccaaagaacacacattccagtggaaggttataaa
attgaagatttgaagttacttgacttagaaagcttagttaaaattgccaatgaagcagaa
atagaaaatccaagagaatttagaagacaagatcttatttttgaaattttaaaagcacaa
actaaaaagggtggctttatacttttcaccggaattttagaaatttcaccagatggctat
ggattcttacgcggaatggattctaatttaagtgatagcgtaaacgatgcgtatgtatca
aactcgcaaattagaaaatttgccttacgtgtaggagatattgttacaggtcaagttaga
gaacctaaagatcaagaaaaatactacgctttattaaaaatcgaagcaattaactacctt
cctttaaaagaagccagagaaagacctttatttgataaccttactccgatttttccaacc
gagaaaatcaaattagaatatgatcctttaaaactcactggtagaatgcttgacttattt
gcccctataggaaaaggtcaaagaagcttgattgtagcacctccaagaaccggtaaaacc
gagctaatgaaagaactagcaactgccattgctaaaaaccatcctgaagctcacttaatc
gtacttttagtagatgagcgtcctgaagaagttacagacatgcaaagatgtgttaaaggt
gaagtttttagctctactttcgacctacctgcttataatcatgttcgcgtagcagaactt
gtaatagaaaaagcaaaaaggatggtagaaacaggtaaagatgtggttatattgcttgat
tccattacaagattagcaagagcttataacaccgctacaccaagtagcggtaaagtttta
agtggtggggttgatgcaaatgcactacataaaccaaaacgcttttttggtgcagctaga
aatatagaacatggaggctcactaaccatcatagcaactgctttgatagaaactggatca
agaatggatgaagttatttttgaagaatttaaaggtacaggaaatagtgaaatcgttctt
gatagaaatatttcagatagaagaatttatcctgcaattaacattataaaatctggtact
agaaaagaagaattgctccaaggtgtcgaaaaactgcaaaaaatttgggcgattagatca
gctatatctcaaatggatgatattgaagcattaaaatttttatactcaaaaatgctcaaa
actaaaagcaatgaagaattgctctctattatgaatgagtaa
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