Campylobacter subantarcticus LMG 24374: CSUB8521_0544
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Entry
CSUB8521_0544 CDS
T03571
Symbol
pnp
Name
(GenBank) polynucleotide phosphorylase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
csm
Campylobacter subantarcticus LMG 24374
Pathway
csm03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
csm00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CSUB8521_0544 (pnp)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
csm03019
]
CSUB8521_0544 (pnp)
03016 Transfer RNA biogenesis [BR:
csm03016
]
CSUB8521_0544 (pnp)
Enzymes [BR:
csm01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
CSUB8521_0544 (pnp)
Messenger RNA biogenesis [BR:
csm03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
CSUB8521_0544 (pnp)
Transfer RNA biogenesis [BR:
csm03016
]
Prokaryotic type
tRNA degradation factors
CSUB8521_0544 (pnp)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
KH_1
S1
PNPase
S1_2
CsrA
S1_RRP5
Motif
Other DBs
NCBI-ProteinID:
AJC90415
UniProt:
A0A0A8H9U7
LinkDB
All DBs
Position
523851..525959
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AA seq
702 aa
AA seq
DB search
MRHEININNHFEIFDTDKVAKQAAGAVLMQEKNAVVLATVAREEKMVEEDFLPLTVQYIE
KAYAAGKIPGGYVKRETKPGDNETLSARIIDRSLRPLFPRGYAYPTQIVIMVLSADPEVD
LQVMSLNAASVALYLSDIPIKAPVCGVRIGRINNEFVLNPSNSELKNSTLDLYIAGVKDE
LLMIEMRALANRQDDKHCMNELSEDDTLKALDFASSAILRGSNEYEKVFAAYRKNSKLEF
KIESDNVQIIDYIKNTYITKLKIAINQMAKSERLSEILQIAKEIESKSIAIENEWKIEDI
EKALHVCKRELIRNQIINENKRADGRGLKDVRKIDIETNILPSAHGSCLFTRGQTQALVV
ATLGNDNDAQMSDMLTEKNPICEKFMVNYNFPGFSVGEASPIKAPGRRELGHGNLAKRAL
HPSVDVDYVYTIRLVSEILESNGSSSMATVCGGALALRAAGVKSEKLVAGVAMGLVFEDE
KYAILTDIMGLEDHDGDMDFKVAGSYEGITALQMDIKLGGIEQQVLKEALYQAKEAREHI
LKLMEEADRNIIVNEAILPKIEIFSVDPNKIPDIIGQGGKTIKEIIEKFEVNIDLDRDKG
EVKITGTDHDLISQSKEYILNLLHSKGSNKKRDKKEMPKFDIGEEFLGRVQKVVEFGVFV
ELKEGVDGLLHNSKIKEKLGVGHEIKVKVAEIKNGKVSLDLA
NT seq
2109 nt
NT seq
+upstream
nt +downstream
nt
atgcgacacgaaataaatatcaataatcactttgaaatatttgacactgataaagtggca
aaacaagctgctggtgcagttttaatgcaagaaaaaaatgcagtagttttggcaaccgta
gcaagagaagaaaaaatggtagaagaggattttttacctcttacagtacaatacatagaa
aaagcttatgcagcaggtaaaattccaggaggttatgttaaaagagaaactaaacccggt
gacaatgaaacactaagcgctaggattatagatagaagcttaagacctctttttccaaga
ggatatgcgtatccaacccaaattgttataatggttctttctgccgatcctgaagtagat
ttgcaagtgatgagtttaaatgctgcaagtgttgctttgtatttaagtgatattcctatc
aaagcaccagtctgtggtgtaagaataggtcgtataaataatgaatttgttttaaatcca
agcaatagtgagttgaaaaatagcaccctagatctttatatagcaggtgttaaagatgag
cttttgatgatagaaatgagagctttggcaaacaggcaagacgataaacactgtatgaat
gaacttagtgaagatgatactttaaaagctttagattttgcaagcagtgcaatcttacgt
ggttccaatgaatatgaaaaagtatttgctgcttataggaaaaattctaaactcgagttt
aaaatagagtcagataatgttcaaattattgactatataaaaaatacttatataacaaaa
ctcaaaattgctattaatcaaatggcaaaaagtgaaaggctaagtgaaattttgcaaata
gcaaaagagattgaaagtaaatctatagctattgaaaacgaatggaaaattgaagatatt
gaaaaagctttacatgtatgcaaaagagaacttattagaaatcaaattattaatgaaaat
aaaagagcagatggtagaggtttaaaggatgttagaaaaatagatatagaaacaaatatt
ttaccaagtgcacacggatcttgtctttttactagagggcaaacccaagctttagttgtg
gctaccttgggaaatgataatgatgcgcaaatgtcagatatgcttacagaaaaaaatcct
atttgtgaaaaatttatggttaattataattttccgggattttctgtaggtgaggctagc
cctataaaagctcctggtagaagagaactagggcatggaaatttagcaaaacgagcctta
catcctagtgtagatgtagattatgtttataccattcgtttggtatctgaaattttagaa
agcaatggttctagttctatggctactgtttgtggcggtgctttggctttaagagctgcg
ggagtaaaaagtgaaaaactagtggcaggtgtggcaatgggacttgtttttgaagatgaa
aaatatgctattttaacagatattatggggcttgaagatcacgatggagatatggatttt
aaagtagcaggaagttatgaagggattactgctttacagatggatataaaacttggtggt
atagagcaacaggttttaaaagaagctttatatcaagcaaaagaagctagagaacatatt
ttaaaactaatggaagaagctgatagaaacatcattgttaatgaagctattttaccaaag
attgagatcttcagtgtagatccaaataaaattcctgatattataggtcaaggtggtaaa
accattaaagaaatcattgaaaaatttgaagttaatattgacttagatagagataaaggt
gaggttaaaataacaggaactgatcatgatttgatttctcaaagcaaagaatatatatta
aatttacttcactctaaaggttctaataaaaagcgcgataaaaaagaaatgcctaaattt
gatattggagaagaatttttaggaagagttcaaaaagttgtagaatttggagtttttgta
gagcttaaagaaggtgtggatggtttattgcataattctaagattaaagaaaagttaggg
gtagggcatgaaattaaagttaaagttgcagaaattaaaaacggaaaagtttctttagat
ttagcctaa
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