Campylobacter subantarcticus LMG 24374: CSUB8521_1204
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Entry
CSUB8521_1204 CDS
T03571
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
csm
Campylobacter subantarcticus LMG 24374
Pathway
csm03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
csm00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
CSUB8521_1204 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
csm03400
]
CSUB8521_1204 (mfd)
Enzymes [BR:
csm01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
CSUB8521_1204 (mfd)
DNA repair and recombination proteins [BR:
csm03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
CSUB8521_1204 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
UvrB_inter
CarD_TRCF_RID
TRCF
ResIII
Cas3-like_C_2
SNF2-rel_dom
DPCD
Motif
Other DBs
NCBI-ProteinID:
AJC91035
UniProt:
A0A0A8HBK5
LinkDB
All DBs
Position
complement(1184189..1187128)
Genome browser
AA seq
979 aa
AA seq
DB search
MQAKLYEYLLINQPELIICENDKEADELAQVCLFLNFKTFVLPDFRAEFGSDLRSFSKEL
FEICKVLNAYHKEDKNKILISPIKTILQKLPGKKHLKNIILKRNSLLVLEKFKEEILHSG
YEFVDIVQDKGEVSIRGDIIDIFAINEEQPFRILLFSDEIESIRYFDIHTQKSIPNELSK
IEICPFLSAFNQEQYENLQEKIQNFQSQSIINDVNSIGFWCVDDFYDYLDLNFVSVKNFD
TNDFEEDISKINQNILPEPRFYKDLISSYNHDFFTFHKDKKITILAKNEALFKALNLQEF
SNIKLKISQERINLIAQDELIISLNKKEKSKRVRKASLVIDELRIGDFVVHEDYGIAKFL
GLEIIAIAGARKEFVALGYLNNDKLLLPVENLYMIDKYIGASGGVPLLDKLGKGSFLKIK
ERLKEKLFAIAFNIVSLAAARTLIKAKELKISQELQDEFIGKAGFFYTKDQSQVCQEITQ
DLKSSQVMDRLLSGDVGFGKTEIAMNAIFTCVKSGYTALFFVPTTLLSAQHFKTLKRRFD
PFDIEIFKLDRFTSAKEKKQILALLKENKPCVVVGTHSLLGVECENLGLVVIDEEHKFGV
KQKEKLKELSKNSHILSMSATPIPRSLNQALSSLKSYSVLQTPPEDRLDVRTFVRESNDA
LIKEAISRELRRVGQIFYIHNHIASIDGCKKYLLDLFPNLKILILHSKIDAKTTEEEMLK
FENKEYDLLLCTSIVESGIDLANANTIIVENSDRFGMADLHQLRGRVGRSSKQGYCYFLI
EDKEKITKGSLKRLTSLESNSYLGSGSVLAYHDLEIRGGGNLLGVDQSGHIEQIGYSLYL
KMLEDEINKLSKKEEIKENKIDLKLNINAFLNSEYISEDRLRLELYRRLSKCMSANEVYE
IEGEMNDRFGRPDIFTKQFLDLIIIKILASKHYKLVSNYEQNICFVKDDESKEVIKAKSK
DDDDVIEAILMHLRKNEKA
NT seq
2940 nt
NT seq
+upstream
nt +downstream
nt
atgcaagctaaattatacgaatacttattaatcaaccaacctgagcttattatttgtgaa
aatgataaagaagcagatgaattagctcaagtttgcttatttctaaatttcaagaccttt
gttttacctgattttagagcagaatttggtagtgatttgcgctctttttctaaagagctt
tttgaaatttgtaaagtattaaatgcttatcataaagaagataaaaataaaattttaatt
tctcctataaaaacaatcttacaaaaactccccggaaaaaagcatctaaaaaacattatt
cttaaaagaaattcgcttcttgttttagagaaatttaaagaagaaattttacatagtggg
tatgaatttgtagatatagttcaagataagggtgaagtttcaatacgtggggatattata
gatatttttgcgattaatgaagaacagccttttagaattttgcttttttcagatgagata
gaaagcataagatattttgatattcatacacaaaaatcaatcccaaacgaactttcaaaa
attgaaatttgtccatttttgagtgcttttaatcaagagcaatacgaaaatttacaagaa
aaaattcaaaattttcaaagccaaagcattattaatgatgttaattctataggcttttgg
tgtgttgatgatttttatgattatttagatttaaattttgtgagtgtaaaaaattttgat
acaaatgattttgaagaagatattagcaaaattaatcaaaatattttacctgagccaaga
ttttataaagatttaataagctcttataatcatgattttttcacttttcacaaagataaa
aaaattactattttggcaaaaaatgaagctttatttaaagctttgaatttacaagaattt
tcaaatattaaattaaaaatatctcaagaaagaatcaacctaattgctcaagatgagctt
atcatctctttaaataaaaaagaaaaaagtaaaagagttagaaaagcaagcttggtgata
gatgagcttagaattggggattttgttgtacatgaagattatggtatagctaaatttcta
ggacttgaaatcattgcaatagcaggagctagaaaagaatttgtggcgcttgggtattta
aataacgataagcttttattacctgtggaaaatttatatatgattgataaatatatcggt
gcaagtggtggtgtgcctttacttgataagcttggaaaaggaagttttttaaagatcaaa
gaaagattaaaagaaaaactttttgctattgcttttaatatagtttctttagcagcagct
agaactttgataaaagcaaaagaattaaaaatttctcaagaattacaagatgaattcatc
ggtaaggcaggttttttttatactaaagatcaaagtcaagtttgtcaagaaattactcaa
gatttaaaaagctctcaagtaatggataggctgctaagcggtgatgtgggttttggtaaa
acagaaatcgctatgaatgctatttttacatgtgtaaaaagtggttatacggctttgttt
tttgtgccaacaaccttactttcagcgcagcattttaaaactttaaagcgaagatttgat
ccttttgatatagaaatttttaaactagatcgttttactagtgctaaagaaaaaaaacaa
attttagcacttttaaaagaaaataagccttgtgtggtagttggaacacattctctttta
ggagttgagtgtgaaaatttaggtttagttgtgatagatgaggagcataaatttggtgta
aagcaaaaagaaaagctcaaagaactaagtaaaaattcacatattctatctatgtcggca
acgcctataccaagaagcttaaatcaagctcttagttctttaaaatcatatagtgtttta
caaactccacctgaagatcgtttggatgtgcgtacctttgttagagaaagtaatgatgct
ttgattaaagaagccatttcaagagaattaagaagagtagggcaaattttttacattcac
aaccatatagcaagtattgatgggtgtaaaaaatatcttttagatttatttccgaattta
aaaattttgattttgcattcaaaaattgatgcaaaaaccacagaagaagaaatgcttaaa
tttgaaaataaagaatatgatttattgctttgtacttctatagtagaaagtggtattgat
ttagcaaatgcaaatactatcatagtagaaaattcagatcgttttggtatggctgatttg
catcaacttagaggaagagtagggcgtagctctaagcaaggatattgttattttctgatt
gaggataaggaaaaaatcacaaaaggttctttaaaaagacttacgagtttagagagtaat
tcttatttgggttcaggaagcgtgcttgcttatcatgatttagaaattcgtggtggtgga
aatttattaggcgtggatcaaagcgggcatatagagcaaattggttatagtttatatctt
aaaatgcttgaagatgagattaacaagctaagcaaaaaagaagaaattaaagagaataaa
atagatctcaaacttaacatcaatgcttttttaaatagtgaatatattagtgaagatcgt
ttgagattggaactttatagaagacttagtaaatgcatgagtgcaaatgaagtatatgag
atagaaggtgagatgaatgatcgttttggcaggcctgatatttttactaagcagtttttg
gatttaatcatcataaaaattttagctagcaagcattataaactagtgagcaattatgag
caaaatatttgttttgtaaaagatgatgagagtaaagaagttattaaagcaaaaagtaaa
gatgatgatgatgtgattgaggctattttgatgcatttaagaaagaatgaaaaagcatga
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