Cyanobacterium stanieri: Cyast_1584
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Entry
Cyast_1584 CDS
T02377
Name
(GenBank) DEAD/DEAH box helicase domain protein
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
csn
Cyanobacterium stanieri
Pathway
csn03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
csn00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Cyast_1584
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
csn03019
]
Cyast_1584
03009 Ribosome biogenesis [BR:
csn03009
]
Cyast_1584
Enzymes [BR:
csn01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
Cyast_1584
Messenger RNA biogenesis [BR:
csn03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Cyast_1584
Ribosome biogenesis [BR:
csn03009
]
Prokaryotic type
rRNA helicases
Cyast_1584
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DeaD_dimer
ResIII
CMS1
Cas3-like_C_2
Flavi_DEAD
AAA_19
HEM4
At4g15545_C
Motif
Other DBs
NCBI-ProteinID:
AFZ47545
UniProt:
K9YMB3
LinkDB
All DBs
Position
1751620..1753071
Genome browser
AA seq
483 aa
AA seq
DB search
MTTSFASLGLSETLVNQLDNIGFNTPTKIQTLAIPELIAGRDVVGQSQTGTGKTAAYSLP
ILDKIDKSDKNVQALILAPTRELAQQVAEAFKDLIGRERIFVTTVYGGQSMERQIRFLEK
GSHIVVGTPGRIIDLLNRKHLKLDSLRYVVLDEADEMLSMGFIDDVKTILSRTPDTRQTT
CFSATMPKEIQLLVKEFMTDAVNVTGEKPQDTPSRIEQVVYMVPRGWSKIKTIQPILEIE
DPQSAIIFVRTKRTASELTSKLQEAGQSVDEYHGDLSQQQRERLIQRWRDGKIKVVVATD
IAARGLDVSDLTHVFNFDLPDNTETYIHRIGRTGRAGKEGKAIALVEPSDRRLLRQIERR
LKQSITVETVPNRSTVEAKRMLKLKEQIQESLSGERLASFLPMVKELNDEYDSSAIAAAV
LQILYDQNCPAWLQQDWEVPPPATPKPNIGGKKYGRGGGKYNRGKSGYGGGKPSRKYDRP
RVR
NT seq
1452 nt
NT seq
+upstream
nt +downstream
nt
atgacaacttctttcgcaagtttaggactttcagaaactctcgttaatcaattagataat
attggttttaatactcctactaaaattcaaacccttgcaatccctgaactaattgcaggt
cgtgatgtggtgggacaatcgcaaactgggacgggtaaaaccgccgcttattctctacct
attttggacaaaatcgataagagtgacaaaaatgtacaggctcttatcctcgctcctacc
agagaattagctcaacaggtggccgaagcctttaaggatttaatcggcagagagagaatt
tttgtaaccaccgtttatggtggtcagtccatggagcgtcaaattcgctttttggaaaag
ggatcccatattgtggtgggtactcccggacgtatcattgacctactcaatcgtaaacat
ctcaagctcgatagcttacgctatgtggtactagatgaagcggatgagatgctcagtatg
ggctttatcgatgatgtgaaaaccatcctctcccgtactcctgatactcgtcaaaccact
tgtttctcggctaccatgcccaaggaaattcagttattggttaaagagttcatgactgat
gcggtaaatgtcactggggaaaaacctcaagacactccttcgcgcatcgaacaggtggtt
tatatggtgcctcggggttggtcaaaaattaagaccattcagcctattttggaaattgaa
gatccccagtcggcgattatctttgtacgcaccaagcgcacagcttctgagttgacttct
aagttacaagaagccgggcaaagtgtggatgagtaccatggtgatttgagccaacaacaa
cgggagcgtttaatccaacgttggcgtgatggcaaaattaaggtggtagtggcgacggat
attgcggcccgtggtttggatgtgtcggatcttacccatgtttttaactttgatttacct
gataataccgagacttatattcaccgtattggacgtacgggaagggctggtaaggaaggg
aaagccattgctttggtggaaccgagcgatcgccgcttattacgtcaaattgagcgtcgt
ttaaaacaatctattactgtggaaacggtgcctaatcgttctaccgtagaagccaaaaga
atgctcaaactcaaggagcaaatccaagagtctcttagtggtgagcgtttagcctctttc
cttcctatggtaaaagagttaaatgatgagtacgattccagtgcgatcgcagcggcagtg
ttacagattctttatgatcaaaactgtcctgcatggttacagcaagattgggaagttccc
ccccctgctactcctaagcccaatatcggcggtaaaaaatacggtcgtggcggcggaaaa
tataaccgtggtaaatctggttatggtggtggtaaacccagtcgtaaatacgatcgcccc
cgggtaagataa
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