Cyanobacterium stanieri: Cyast_1821
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Entry
Cyast_1821 CDS
T02377
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
csn
Cyanobacterium stanieri
Pathway
csn03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
csn00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Cyast_1821
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
csn03019
]
Cyast_1821
03400 DNA repair and recombination proteins [BR:
csn03400
]
Cyast_1821
Enzymes [BR:
csn01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Cyast_1821
Messenger RNA biogenesis [BR:
csn03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Cyast_1821
DNA repair and recombination proteins [BR:
csn03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
Cyast_1821
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
HTH_40
DEAD
Helicase_C
RecQ_Zn_bind
HRDC
ResIII
TnsD
HTH_7
Sigma70_r4_2
Helicase_Sgs1
HTH_36
HTH_24
HTH_IclR
Motif
Other DBs
NCBI-ProteinID:
AFZ47777
UniProt:
K9YMT5
LinkDB
All DBs
Position
2027909..2030050
Genome browser
AA seq
713 aa
AA seq
DB search
MSLLSESLKKYFGYDSFRPGQEKIVQDAIAHKDLLVIMPTGGGKSLCFQLPALLKQGVTI
VISPLISLMQDQVTALQDNGIGATYLNSTLNYEQTKIRQRDILAGKIKLLYLAPERLVSD
TFQPFLVTLAQKIGIAAFAIDEAHCISEWGHDFRQEYRQMRYLRQQFPQVPITALTATAT
VRVQRDIIEQLNLRNPQIHRFSFNRQNLYYEVQEKERRAYNQLLHIIRSHQGSGIVYCIS
RKSTEEIAERLVKDGVSALPYHAGLSDKVRSHYQTSFIRDDVRIMVATVAFGMGINKPDV
RLVVHYDLPRNIESYYQESGRAGRDGEKANCILLYSRGDKQKIHYFIRQKTNPQEQKIAY
AQLAKVIEYADTNYCRRIPQLSYFGEKFKGDCGNCDNCLNPKPIEDWTIEAQKFLSCVYR
TNQRFGIKHIIDVLRGSRDKKIYEYGHHLLSTYGIGKDHTTDEWKNLATSLVYQNLVRQT
NDGFNILKINEQSKKILKGEKKVYIAVKGKTIKKVTRDTNSQALEVEILLNKLKMLRKKL
ADLENIAPYVIFNDATLTIMAQMQPDTKAKFAQLSGVNDYKLNKYGDIFISEIRTFIQQK
QLPFQLPTNTQMKTLRLYQQGLNIADIAKERGLSVSSIVSHLSELIELNQPVTIDNLVKA
EKQKVILNTLKIIGNKKLKEIKERLPDEYTYDEIKLVRAWFKRIDNEQWTMDN
NT seq
2142 nt
NT seq
+upstream
nt +downstream
nt
atgtctttacttagtgaatctctgaaaaaatacttcggttatgacagttttcgcccaggg
caagaaaaaatagtccaagatgcgatcgcccataaagaccttttagttatcatgcccacg
gggggcggaaaatcgctctgtttccaacttcctgcgctcttgaagcagggtgtaaccatc
gttatatcccccctcatatccctgatgcaagaccaagttacagccctacaggataacggg
attggggcaacctatcttaatagtacccttaattacgaacaaaccaaaatccgtcaacgg
gatattttagcagggaaaataaaactcctttacctcgcccccgaaagactggttagcgat
acatttcaaccttttttagtaacccttgcccaaaaaatcggcattgccgcctttgccatc
gatgaagcccattgtatctcggaatgggggcatgattttcgccaagaatatcgccagatg
agatatttacgccaacaatttccccaagtgccaattaccgccctcaccgctaccgccaca
gtcagggtgcaacgggatattatcgaacagttaaacctcagaaatcctcaaattcaccgt
tttagtttcaatcgtcaaaacctttactacgaagtgcaggaaaaggaaagacgagcctat
aatcaactgctccatattattcgttcccatcaaggttctggtatagtttattgtatcagt
cgcaaaagtaccgaagaaattgccgaaagacttgtcaaagatggggtttctgccctccct
taccatgccggattgagtgataaagtgcgatcgcactatcaaaccagttttatccgagac
gatgtacgtataatggtagctaccgtcgcctttggcatgggcatcaacaaacccgatgtc
cgtttagtggtacattacgacttaccccgcaacatagaaagctattatcaagagtcaggg
agggcaggtagagacggagaaaaagctaactgtattctcctatatagccgtggcgataaa
caaaaaatccattatttcatcagacaaaaaaccaatccccaagaacaaaaaattgcctat
gcccaattagcaaaagtcatcgaatatgccgacacaaattattgtcgtcgtatcccccaa
ttaagttattttggtgaaaaatttaaaggcgattgtggtaattgtgataactgtctaaac
cctaaacccatagaggattggactatcgaagcacaaaaattcttgtcctgtgtttatcgt
actaatcaacggtttggaattaaacatataattgatgttttaagaggttcaagggataaa
aaaatctacgaatatggacatcatttattatccacctatggcataggaaaagatcatacc
accgatgaatggaaaaacctagccacttcccttgtttatcaaaatttagtcagacaaacc
aacgatggatttaatattcttaaaataaacgagcaaagtaaaaaaatcctcaaaggagaa
aaaaaagtttatatcgccgtcaagggaaaaaccatcaaaaaagttaccagagatactaac
tctcaagcgctagaagtagaaatactgcttaataaactgaaaatgttacgcaaaaaatta
gccgacttagaaaacattgccccctatgtcattttcaatgacgcaacccttaccatcatg
gcgcaaatgcaacccgacaccaaagccaaatttgcccaactgtctggggtaaacgactat
aaattaaacaagtatggagatatatttatctccgaaattagaacctttatccaacaaaaa
caactgcccttccaactgcccaccaatacccaaatgaaaaccctacgactatatcaacag
gggttaaacattgctgacattgccaaggaaagaggattatccgtcagtagtatcgtatct
cacctcagcgaattgatcgaattaaatcaacctgttaccattgataatctcgtgaaagca
gagaaacaaaaagttattctcaatactcttaaaataataggtaataaaaagttaaaggag
attaaagagcgtttacctgatgaatatacctatgatgaaataaaattagttcgagcatgg
tttaagagaattgacaatgaacaatggacaatggacaattaa
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