Clostridium cf. saccharolyticum K10: CLS_33270
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Entry
CLS_33270 CDS
T02614
Name
(GenBank) exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
cso
Clostridium cf. saccharolyticum K10
Pathway
cso03410
Base excision repair
cso03430
Mismatch repair
cso03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
cso00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
CLS_33270
03430 Mismatch repair
CLS_33270
03440 Homologous recombination
CLS_33270
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cso03400
]
CLS_33270
DNA repair and recombination proteins [BR:
cso03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
CLS_33270
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
CLS_33270
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
CLS_33270
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RecJ_OB
DHH
DHHA1
Cep57_MT_bd
Motif
Other DBs
NCBI-ProteinID:
CBK78533
LinkDB
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Position
complement(3182711..3184420)
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AA seq
569 aa
AA seq
DB search
MAEEIWMLQTKRADFGVIAERFGIDPVTARVIRNRGIEGMENIERYLYGNLDGLYSPWLL
KDMKPAVEILRQKITAGKRIRIVGDYDIDGVCSTYILYTALRRLGAEADYAIPDRIKDGY
GINESIIREAHEDGIDTILTCDNGISAFSQISLAKEFGMTVIVTDHHEVPLDAEAEVIPP
ADAVVNPKQRDCRYPFPEICGAVVAYKLVEALYEEYGIAREEWLDMLEFAAIATVGDVMR
LQDENRIIVKYGLRRMAETKNLGLKKLAEKNNLDLSTITAYHIGFVIGPCLNAGGRLQTA
KLALSMLLAETEDEAEALAQELKSLNDMRKDMTEQWTAEAKLLADTRYRDDKVLVVFLPE
CHESLAGIIAGRLREYCQKPALVLTRGEEAVKGSGRSIEAYHMFKKLSEVKELLLKFGGH
PMAAGLSLLEENIEPFRKALNENSGLTEEDFKAKVWIDVPMPIDYIKERLVEELKILEPF
GQGNEKPLFAQKGVRIRSCRVIGKNKNVVKMVLEGQGGRAMDGMLFTDGLAFEEERNGRR
MLDIVYYPEINEYNGSRNIQVVIRRYRFC
NT seq
1710 nt
NT seq
+upstream
nt +downstream
nt
atggcagaggaaatttggatgcttcagacgaaacgggctgattttggggtgattgccgag
cggtttggaatcgatccggtgaccgccagagtgatcagaaaccgcggaatcgaggggatg
gagaatatagagcggtatctgtatggaaatctggacggcctgtattccccgtggcttttg
aaggatatgaaaccggctgtagaaattttgaggcagaaaattacagcgggaaagcggatt
cggatagtgggagactacgatattgacggcgtctgctctacctatattctgtatacagcg
ctcaggcgccttggcgcagaggcagattatgcgatccctgaccgcattaaggatggatat
ggaatcaatgaatccattatcagggaggcccatgaggatgggatcgacacaattctgacc
tgcgacaatgggatatcggccttttcacagatcagccttgccaaagagttcggcatgact
gtgattgtgaccgatcaccacgaggttcccctcgacgcagaggcggaggtgattccgccg
gctgacgctgtcgtaaatccgaaacagagagactgcagatatccatttccggaaatctgc
ggggccgtggtggcatacaagctggtggaggctctctatgaggaatacgggattgcgcgg
gaggaatggctggacatgctggaatttgcagccattgcaacagtgggagatgtgatgagg
ctccaggatgaaaacagaatcattgtcaaatacgggctccgcaggatggcagaaacgaag
aatctggggcttaaaaagctggcggaaaagaacaatctcgatttgagtacaataacggcc
taccacatcggattcgtcatcggtccctgcctgaatgccggaggcagacttcagacggca
aagctggccctgtccatgcttctcgcggaaacggaagacgaggcggaagccctggctcag
gagcttaagagcttaaacgatatgaggaaggatatgacagagcagtggacggcagaggca
aagcttttggctgacacccggtacagggatgacaaggttctggttgtattcctgccggaa
tgccacgaatctctggccggaattatcgcgggaaggctcagggaatactgccagaagccg
gcgctcgtgctgaccagaggagaggaggctgtgaagggctccggacgctccatagaggct
taccacatgtttaaaaagctgtctgaggttaaggagcttcttctcaagttcggagggcat
ccgatggcagccgggctctcgcttctggaagaaaacatcgagccgttccggaaggctctg
aatgaaaattccggcctgacagaggaggattttaaggcaaaggtgtggatcgacgtgccg
atgcccattgactacataaaggagagactggtggaggagcttaaaattctggagcccttt
ggccagggaaatgaaaagcccctgtttgcccagaaaggggttagaatcaggagctgccgg
gtaatcgggaaaaataagaatgtggtaaaaatggttctggaagggcagggaggacgggcc
atggacggaatgctgtttacagacggcctggccttcgaggaagagcgaaatgggcggaga
atgctcgacatcgtatattaccctgaaatcaatgaatacaacggcagtagaaatatccag
gtggtgatacgcaggtacaggttctgttaa
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