Clostridium cf. saccharolyticum K10: CLS_37830
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Entry
CLS_37830 CDS
T02614
Name
(GenBank) polyribonucleotide nucleotidyltransferase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
cso
Clostridium cf. saccharolyticum K10
Pathway
cso03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cso00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CLS_37830
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cso03019
]
CLS_37830
03016 Transfer RNA biogenesis [BR:
cso03016
]
CLS_37830
Enzymes [BR:
cso01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
CLS_37830
Messenger RNA biogenesis [BR:
cso03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
CLS_37830
Transfer RNA biogenesis [BR:
cso03016
]
Prokaryotic type
tRNA degradation factors
CLS_37830
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNase_PH
S1
RNase_PH_C
PNPase
KH_1
S1_RRP5
OB_PDCD11
CvfB_2nd
OB_RRP5_4th
KH_KhpA-B
SPATA25
Mistic
KH-I_KHDC4-BBP
KH_N4BP1_2nd
KH_Vigilin
KH_PNO1_2nd
Motif
Other DBs
NCBI-ProteinID:
CBK78888
LinkDB
All DBs
Position
3633370..3635481
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AA seq
703 aa
AA seq
DB search
MYKSFSMELAGRTLTVDVGRVAAQANGAAFMHYGDTTVLSTATASDKPREGIDFFPLSVE
FEEKMYAVGKIPGGFNKREGKASENAVLTARVIDRPMRPLFPKDYRNDVTLNNLVLSVDP
DCSPEYTAMLGSAIATCISDIPFDGPCATTQIGMIDGEFIVNPTSAQRKVSDMALTVAST
REKVIMIEAGANEVPEDVMIQAIFKAHEVNQEIIKFIDTIVAECGKAKHSYESCAVPEEL
FAAIREIVPQEEMEEAVFTDEKQKREENIRVITERLEEAFAENEEWLSVLGEAIYQYEKK
TVRKMILKDHKRPDGRGITEIRPLAAEIDLLPRVHGSGMFTRGQTQILNICTLAPLSEAQ
KLDGLDENETSKRYMHHYNFPSYSVGETKPSRGPGRREIGHGALAERALIPVLPSEEEFP
YAIRTVSETMESNGSTSQASICASTLSLMAAGVPIKAPVAGISCGLVTGDTDDDYIVLTD
IQGLEDFFGDMDFKVGGTYKGITSIQMDIKIHGLTRPIIEEAIAKTREARLYILDEIMKP
VIAEPRKEVGKYAPKIEQITIDPQKIGDVVGKQGKVINKIIEQTGVKIDINDDGNVSVCG
TDKAMIDKAISIIRSIVTDIEPGQVLTGTVVRIMNFGAFVELAPNKDGMIHISKLSDKRV
AKVEDVVNIGDEVTVKVIEVDKMGRINLSMKPGDLAPKASKGE
NT seq
2112 nt
NT seq
+upstream
nt +downstream
nt
atgtataagagtttttcaatggaactggccggcagaacactgacagtagatgtcggcaga
gtggcagcacaggcaaacggcgctgcgtttatgcactatggagatacgacagtactgtcc
acagcgacagcttccgataagccgagagagggaatcgatttcttccccctgagcgttgag
tttgaagaaaagatgtacgccgtgggaaagattccgggaggcttcaataagagagagggc
aaggcttctgaaaatgcagtactgacggcccgcgtgattgaccgtcctatgcgtcccctg
ttcccgaaggattacagaaatgacgtgaccttaaacaacctggttctgtctgtggatccg
gactgcagcccggagtacactgccatgcttggctccgccattgccacctgcatctcagac
attccatttgacggtccctgtgcgacgacacagatcggcatgatcgacggggagtttatc
gtaaatcctacctccgcccagagaaaggtttccgatatggctctgactgtcgcttccaca
agggagaaggttatcatgatcgaggccggggccaacgaggtgccggaggatgtgatgatc
caggctattttcaaggcacatgaggtaaaccaggaaattatcaaatttatcgataccatt
gtcgccgagtgcggcaaggcaaagcacagctatgaaagctgcgctgttccggaggagctc
tttgcagccatcagggagatcgtgcctcaggaggagatggaggaagctgtcttcacagat
gagaagcagaagcgtgaggagaacatccgcgttatcacagagcgcctggaggaggctttt
gctgagaatgaagagtggctttctgtactgggagaggccatctaccagtatgagaaaaag
acggtgagaaagatgatcttaaaggatcacaagcgtcctgacggccgcggcatcacggag
atccgcccgctggctgccgagatcgatctgctccccagagttcacggctccggtatgttc
acccgcggacagacccagatcttaaatatctgtacgctggctccgctgtctgaggctcag
aagttagacggactcgatgagaatgagacaagcaagagatatatgcaccattataacttc
ccgtcctactctgtaggagagaccaagccgtccagaggcccgggacgccgcgagatcgga
cacggtgctctggcagagagagctctgattccggtgcttccaagcgaggaggaattccct
tacgccatccgcacggtatctgagaccatggagtccaatggctctacttcccaggccagc
atctgtgcatccactctgtccctgatggcagcaggcgtgccgatcaaggctccggtagcg
ggaatctcctgcggtctggtgacaggcgacacagatgacgattatattgttctgactgat
attcagggacttgaggacttcttcggagatatggacttcaaggtaggcggaacttacaag
ggaatcacatccattcagatggatattaagattcacggactgacaaggccgattatcgag
gaggctattgccaagacaagagaggcaaggctctacattctcgacgagatcatgaagcct
gttatcgcagagcccagaaaagaggtaggcaagtatgctccgaagattgagcagattacc
attgatcctcagaagatcggagatgttgtgggcaagcagggcaaggtgatcaacaagatt
atcgagcagacaggcgtgaagattgatatcaacgacgacggaaatgtttctgtgtgcgga
acagataaggctatgatcgataaggctatcagcattatcagaagcattgtcacagatatt
gagccgggacaggtgcttacgggaacggttgtgcgcattatgaatttcggagctttcgtt
gagctggctccaaacaaggacggaatgatccacatttccaagctctccgacaagagagtg
gcaaaggtggaggatgtggtaaacatcggcgatgaggttaccgtaaaggtaatcgaggtg
gacaagatgggccgcatcaacctgagcatgaagccgggcgatctggctccgaaggcttcc
aaaggggaataa
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