Cytobacillus solani: LIS82_02730
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Entry
LIS82_02730 CDS
T08360
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
csoa
Cytobacillus solani
Pathway
csoa03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
csoa00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LIS82_02730
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
csoa03019
]
LIS82_02730
03009 Ribosome biogenesis [BR:
csoa03009
]
LIS82_02730
Enzymes [BR:
csoa01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
LIS82_02730
Messenger RNA biogenesis [BR:
csoa03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
LIS82_02730
Ribosome biogenesis [BR:
csoa03009
]
Prokaryotic type
rRNA helicases
LIS82_02730
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
NDK
Helicase_RecD
AAA_22
Motif
Other DBs
NCBI-ProteinID:
USK55486
LinkDB
All DBs
Position
488668..490164
Genome browser
AA seq
498 aa
AA seq
DB search
MNTLTKFQDLGISPATMKAIKRMGFEEATPIQAQTIPLSLENKDLIGQAQTGTGKTAAFG
IPMIDKIDYSQDVIQGIIIAPTRELAIQVSEELYKIGYGKRTRVLAIYGGQDINRQIRAL
KNRPHIIVGTPGRLLDHINRKTLRLENVHTVILDEADEMLNMGFIEDIEAILAQIPEEHQ
TLLFSATMPGPIKKIAERFMKEPQIVRVKTKEVTVSQIEQYYLEVQERSKFDILTRLLDI
QSPELAIIFGRTKRRVDELAEALNLRGYNAEGIHGDLSQAKRMSVLRKFKEGSIDVLVAT
DVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTGRAGKTGVAMTFITPREKSYLQVVER
TTKRKMERMKPPTLDEALEGQQKAVIERILQSVESNNLQYYKQAAEELLEQQDATTIVQA
VLKMLTKEPDTTPVKLTEEKPLPQKRERRFDDKNKSYGGQRGRQKAPVRSRQGSQNKRYS
NSNNNNNNNNRSNSNSYR
NT seq
1497 nt
NT seq
+upstream
nt +downstream
nt
atgaacacattgacaaagtttcaagatttgggcatcagccctgcaacgatgaaggctatt
aagagaatgggatttgaagaagcgaccccaattcaagcacaaacgattcctttgagtcta
gaaaacaaagatttgatcggacaagctcaaacaggaacaggaaaaacagcagcgtttggt
ataccgatgatcgacaaaattgattacagtcaagatgtgattcaaggaattatcattgcc
ccaacacgtgagcttgctattcaagtatcggaagaattgtataaaatcggctatggaaaa
agaacaagagtgttagcgatttatggcggccaagatattaatcgccaaattcgtgcgtta
aaaaaccgtcctcatattattgtcggtacaccaggacgactgcttgaccatattaaccga
aaaacgttacgtctagaaaatgttcatacagtgattctcgatgaggctgatgaaatgctg
aatatgggattcattgaggacatcgaggcaatccttgcacaaattcctgaagaacaccag
actcttttgttctcagcaacaatgcctggtccgatcaaaaaaattgctgaacgttttatg
aaagaaccacaaatcgtccgtgtgaaaacaaaggaagtaactgtatcgcaaattgagcag
tattacttagaagtacaggaaagaagtaaatttgatattttgacaagattgcttgatatt
caatcacctgaacttgctattatatttggacgaacaaagcgtcgggttgacgaattggca
gaggcgttgaaccttagaggatataatgcagagggaattcatggcgatttaagtcaagcg
aagcggatgtctgtattacgcaaatttaaagaaggctctattgatgtgctagtggcaaca
gatgttgcggcacgtggtttggatatctcaggtgttacacatgtatacaatttcgatatt
ccacaagatccggaaagctatgttcaccgaattggacgtaccggacgtgctggcaaaaca
ggcgtagcaatgactttcattacaccgagagaaaaatcatatctgcaggtagttgaaaga
acaaccaaacggaaaatggaacgcatgaagccaccaactttagatgaggcgttagaaggt
cagcaaaaagctgttatcgaacgaattctgcaatctgtggaatcgaataatctgcaatat
tataaacaagcagctgaagaattattagagcagcaagatgcaacaacgattgttcaagca
gtattaaagatgttaacaaaagaacctgatacaacgccagtcaagttaacagaagaaaaa
ccgctgccacaaaaaagagaacgcagatttgatgacaaaaataaatcatatggcggtcaa
agaggaagacaaaaggcgccagtaagatcacgccaaggatcccaaaataaacgctatagc
aacagcaataacaataataacaataataatcgatctaattctaatagttatcgttaa
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