Cytobacillus solani: LIS82_25360
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Entry
LIS82_25360 CDS
T08360
Symbol
rho
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
csoa
Cytobacillus solani
Pathway
csoa03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
csoa00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LIS82_25360 (rho)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
csoa03021
]
LIS82_25360 (rho)
03019 Messenger RNA biogenesis [BR:
csoa03019
]
LIS82_25360 (rho)
Transcription machinery [BR:
csoa03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
LIS82_25360 (rho)
Messenger RNA biogenesis [BR:
csoa03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
LIS82_25360 (rho)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
S1CSD-TOTE-2
OB_RNB
AAA_22
ATPase_2
AAA
AAA_25
NACHT
Spore_III_AA
DUF6417
Motif
Other DBs
NCBI-ProteinID:
USK54828
LinkDB
All DBs
Position
complement(4916091..4917365)
Genome browser
AA seq
424 aa
AA seq
DB search
MGLNISSLENMKLKELYELAREYKVSYYSKLSKKELIFAILKARAEKEGYFFMEGVLEII
QSEGFGFLRPINYSPSSEDIYISASQIRRFDLRNGDKVSGKVRPPKENERYFGLLQVEAV
NGDDPETAKERVHFPGLTPLYPDLQMKLETTPKHLSTRIMDVLAPVGFGQRGLIVAPPKA
GKTMLLKEIANSITTNHPDVELIVLLIDERPEEVTDIERSVAGDVVSSTFDEVPENHIKV
AELVLERAMRLVEHKRDVVILMDSITRLARAYNLVIPPSGRTLSGGIDPAAFHRPKRFFG
AARNIEEGGSLTILATALVDTGSRMDDVIYEEFKGTGNMELHLDRSLAERRIFPAIDIRR
SGTRKEELLIQKDHLDKLWAIRKSMSDSPDFAEKFLRKLRQTKSNEEFFANLSEEMKAKK
NGIK
NT seq
1275 nt
NT seq
+upstream
nt +downstream
nt
atgggattaaatatttcaagtttagaaaatatgaagctaaaagagctttatgagcttgct
cgtgaatataaagtatcttattacagtaaattatcaaaaaaggaattaatatttgccatt
ttaaaggcccgagctgaaaaggaaggatacttctttatggaaggtgtccttgaaatcatt
cagtcagaaggctttggatttttgcgtccaatcaactattcaccaagctccgaggacatc
tatatatcggcatctcagatccgccgcttcgatttaagaaatggagataaagtttctggt
aaagttcgtcctccaaaagaaaatgaacgatattttggtcttcttcaagtagaagctgtc
aatggggatgacccagaaacggcaaaggaacgtgtccatttccctggattaacgccttta
tatccagatttgcagatgaagcttgaaacaacgcctaagcatctatccactcgaattatg
gacgtgcttgcacctgttggatttggtcagcgcggattgattgttgctccgccaaaggca
ggtaaaacgatgctcttaaaagagattgccaacagtattaccacgaatcacccagacgtt
gagttaatcgttttattaattgatgagcgtccagaagaagtaacagatattgagcgatct
gttgcaggtgatgtggttagctcaacatttgacgaggttcctgaaaaccatattaaagtg
gccgagcttgtgcttgaacgcgcgatgcgtcttgttgaacataagcgagatgtagtcatt
ttgatggacagtattactaggttagcaagagcgtataacctggtaatcccacctagcgga
agaacattatcaggggggattgacccagcagccttccaccgtccgaagcgtttcttcggt
gcggcccgtaatattgaagaaggcggaagcttaaccattctagctacagctctagtcgac
acaggttctcgtatggacgatgtcatctatgaagaatttaaagggacagggaatatggag
cttcatctggatcgttcacttgctgaacgcagaattttccctgctattgatattcgccgt
tcaggaacacgtaaagaggagcttctcattcaaaaggatcatctggacaagctttgggct
attagaaaatcaatgtctgattcgcctgattttgctgagaagttcttgcgtaagctaaga
cagactaaatcaaatgaagaattttttgctaacctctcagaggaaatgaaggcaaagaaa
aacgggattaagtaa
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