Ceratosolen solmsi marchali (fig wasp): 105359351
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Entry
105359351 CDS
T06056
Name
(RefSeq) regulator of nonsense transcripts 1
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
csol
Ceratosolen solmsi marchali (fig wasp)
Pathway
csol03013
Nucleocytoplasmic transport
csol03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
csol00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
105359351
03015 mRNA surveillance pathway
105359351
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
csol03019
]
105359351
Enzymes [BR:
csol01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
105359351
5.6.2.5 RNA 5'-3' helicase
105359351
Messenger RNA biogenesis [BR:
csol03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
105359351
mRNA cycle factors
Common to processing body (P body) and stress granule
105359351
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
SLFN-g3_helicase
DEAD
Helicase_RecD
UvrD-helicase
NPHP3_N
ATPase
nSTAND3
SRP54
AAA_22
AAA_16
AAA_10
AAA_7
AAA_5
AAA_32
Motif
Other DBs
NCBI-GeneID:
105359351
NCBI-ProteinID:
XP_011494239
UniProt:
A0AAJ6VKY3
LinkDB
All DBs
Position
Unknown
AA seq
1124 aa
AA seq
DB search
MSVDAYGPSSQTLTFLDTEEADLIGADTQGSEFDFTDFTLPSPSQTQASQHDAAQNSQQS
QPVQINGTVGTSALDLNISGAAQSLAELQFEEEEEEAYYNRDLPDHACKYCGIHEASCVI
MCNVCRKWFCNGRGNTSGSHIINHLVRANHKEVTLHRDGPLGETILECYSCALRNVFVLG
FIPAKADSVVVLLCRQPCAAQSSLKDMNWDQEQWKPLIEDRSFLSWLVKIPSEQEQLRAR
QISAQQINKLEELWRDNINATFQDLEKPGVDEEPQQVLLRYEDGYQYQNIFGPLVKLEAD
YDKRMKESQTQENIEVRWDVGLNKKTIAYFLLAKTDGDMKLMHGDELKLKYLGELHKPWS
GVGHVIKIPDNYGEEVGIELKNNSGAPTDSSSFVVDFIWKSTSFDRMQLALRKFAVDGNS
VSAYIYHRLLGHEVEEVLFRCHLPKHFSAPNLPDLNRSQVYAVKHAIQRPLSLIQGPPGT
GKTVTSATIVYQLVKQNGGPVLVCAPSNTAVDQLTEKIHKSNLKVVRLCAKSREAIDSPV
SFLALHNQINNLETNLELQKLQQLKDETGELSSVDEKRYRLLKKGSEKELLEAADVICCT
CVGAGDPRLHRLKFHSILIDESMQATEPECMVPVVLGAKQLILVGDHCQLGPVVMCKKAA
RAGLSQSLFERLVVLGIRPFRLEVQYRMHPDLSKFPSNFFYEGSLQNGVCADERKLLKID
FPWPALDKPMFFYVTQGQEEIAGSGTSYLNRTEASNVEKITTRFLRCGVKPEQIGVITPY
EGQRAFLVQYMQYQGSLHSKLYQEIEVASVDAFQGREKDIIIMSCVRSNEHQGIGFLNDP
RRLNVALTRAKYGIIIVGNPKVLSKQPLWNHLLSFYKEQKVLVEGPLNNLKESMIQFAKP
KKLVNAANPGSHFMSTSMYDAREAMIPGSVYDRSGAQVNGAQTHNPYYQRNVPIDIFSRT
HDTISYISPERAQAAMNNVPVPIGMFMNMAHVPPRFYNQHQQALQARQNQRIRRSSNIKG
SNKVNMNTGLRAGKLSQSEQNTQPYSQPGLLLTQGIMQGMSQPGFSLSQPGLSQAELSQD
SFAVGEFQSQMDGLLSQDSTYQGDRSGFYQSGQSQAGGHFSQPY
NT seq
3375 nt
NT seq
+upstream
nt +downstream
nt
atgagcgtcgacgcgtacggccctagtagccagacgttgacgttcctggatacggaggag
gcggaccttatcggtgccgacacccagggtagtgaattcgactttacggatttcacgctg
ccttcgccgagtcagactcaagcttcgcagcacgacgcggcgcagaatagtcagcagagt
cagcccgtgcagattaatggaactgttggtacatcagcattagatctgaacatttctgga
gcagctcaaagcttagctgagcttcagtttgaagaagaagaagaagaagcttattacaat
cgtgatttaccagatcatgcttgtaaatattgtggtattcatgaggcatcttgtgttatt
atgtgtaatgtttgtcgtaaatggttttgtaatggacgaggcaatacatctggatctcac
atcatcaatcacttagtacgggctaatcataaggaagttacattgcacagagatggacca
ctgggtgaaaccatattagaatgctattcatgtgcactaaggaacgtttttgtacttgga
tttataccagcaaaagctgattctgttgttgtactcttatgtcgtcaaccgtgtgctgca
caaagctctttaaaagatatgaattgggatcaagagcaatggaaacctcttatagaagat
cgtagttttctttcgtggttagtgaaaataccatcagaacaagaacaacttcgtgcgcgt
cagatttcagcccaacaaataaacaaacttgaagaactgtggcgtgataatatcaatgca
acttttcaagatcttgagaaacctggcgtggatgaagaacctcaacaagttcttttacgt
tatgaagatggctatcaatatcaaaacatctttggtccactggtaaaactcgaagcagat
tatgataaacgaatgaaagaatcacagacacaagaaaatattgaagttcgatgggacgta
ggtttgaataagaaaaccattgcatattttttgctagcaaagaccgatggagatatgaaa
ttgatgcacggtgacgaattaaaattgaagtacttaggagaattacataagccatggtca
ggcgttgggcatgttataaaaattcccgataattatggagaagaagtgggaattgagtta
aaaaacaactctggtgctccgaccgattcaagcagttttgtagttgattttatctggaaa
agtaccagctttgatcgtatgcaattggcattgagaaaattcgctgtggatggcaactca
gtctctgcctacatttatcatcgtcttcttggtcacgaagtagaggaagttctttttcgt
tgccatcttccgaaacatttcagtgctcccaatctgccagatcttaaccgatcccaagtt
tatgcggtaaagcacgcgatccagcgcccgttgtcattgattcagggtccaccaggaacc
ggcaaaactgtaactagtgctacaatcgtctatcaattagttaagcaaaatggtggtcct
gttttggtgtgcgcaccttctaacacagctgttgatcagttgacagaaaagattcataag
agcaatcttaaggtcgtgagactttgcgcgaaatcaagagaagcaattgattcacctgtc
agttttcttgcactgcataatcagatcaataatctagaaacaaatttggaattgcaaaag
ttgcaacagttaaaagatgaaactggtgaattgtcaagtgtggacgagaaacgttacaga
ttacttaaaaagggttctgagaaagaattgctcgaagcagctgatgtgatatgctgtact
tgcgtgggagcgggcgatccacgactgcaccgtctgaagttccattcgatccttatcgac
gagagcatgcaagctaccgagccagaatgcatggtaccggtagtattgggtgccaagcaa
cttatcctcgtaggtgatcactgccagcttggacctgttgtcatgtgtaaaaaggctgca
cgcgctggtctgtcgcagtctctttttgagcgattggttgtccttggtatcaggcctttt
aggctagaagttcagtatcgcatgcatcctgatctatcaaagttcccatccaatttcttt
tatgaaggctctttgcaaaatggcgtttgtgccgatgagcgaaaacttttgaagatcgat
ttcccatggcctgcgctcgataaacccatgttcttttatgtgactcaaggacaagaggag
atagccggtagtggtacatcctatctgaacagaaccgaggcatcgaacgtcgagaagatt
acaacgcgcttcttgcgttgcggtgttaaaccagaacagattggcgtcatcacaccgtac
gaaggacaacgtgcttttcttgtccaatacatgcagtatcagggatcgttgcattcaaaa
ttgtaccaggaaatcgaagtggcaagtgttgatgctttccaaggccgagagaaagatatc
attattatgtcgtgcgtgaggtcaaacgaacaccaaggaataggtttcttgaatgatcca
aggagattgaacgttgcccttacaagagccaaatatgggataataatagtaggaaatcca
aaagtcctatcaaagcagcccctgtggaatcatttattgagtttttacaaggaacaaaag
gtgctggtagaaggcccattgaataatttaaaggaatccatgatacaatttgcaaagcca
aagaaactcgtgaatgcagcaaatcctggatcacattttatgtctacgtcgatgtatgac
gcaagagaggctatgattcctggatccgtttatgatagatcgggtgcccaagtgaacggc
gcccaaacgcacaatccttattatcagcgcaatgtgcccatcgacattttcagtcgtact
cacgacactataagctacattagtccggaaagagctcaggctgcgatgaacaatgtgccc
gtaccaataggcatgttcatgaacatggcgcatgtgccgcctcgtttctacaatcagcat
caacaagcactgcaggcgagacaaaaccagcgaattcgtcgtagtagtaatatcaagggt
agcaacaaagtgaatatgaatacagggctgcgtgcgggaaaacttagccagtcagagcag
aatacacaaccatacagccagccgggattgctgttgacgcaaggcataatgcaaggaatg
tcacaacccgggtttagtttgtcacaacctggattatcacaagcggaactctcgcaggac
tcattcgcggtgggagagtttcagtcacagatggatggacttttgtcgcaagattcgact
tatcagggtgaccgtagtggtttttaccaatcaggtcagtcccaagcaggaggccacttc
tcccagccatattga
DBGET
integrated database retrieval system
