Entry |
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Name |
(RefSeq) uncharacterized protein LOC105359850
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KO |
K14400 | pre-mRNA cleavage complex 2 protein Pcf11 |
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Organism |
csol Ceratosolen solmsi marchali (fig wasp)
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Pathway |
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Brite |
KEGG Orthology (KO) [BR:csol00001]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
105359850
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:csol03021]
105359850
03019 Messenger RNA biogenesis [BR:csol03019]
105359850
Transcription machinery [BR:csol03021]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
105359850
Messenger RNA biogenesis [BR:csol03019]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
105359850
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SSDB |
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Motif |
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Other DBs |
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LinkDB |
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Position |
Unknown
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AA seq |
1888 aa
MKRLKNYIYLVYITKTKYYLKMSGSNNSKGHNSEEIVEEYISSLLELTINSKPLINMLTI
LAEDYIDHATAIVEAVEVHLQKVRSEIKLPVLYLIDSIVKNVNRAYLSLFTKNIVNTFCS
VFEKVDENTRASMWKLRQTWNEVFPAKKLFALDVRVHNIDPAWPITPLPPSSVSTKSIHV
NPKFLTMQKQQQATQQPTIGVTQQVPQVPPPTTIVPVITAAVHTSVPVVKISTGKHVSTS
EAEMREQLLKKQKELIDLQKQKIELELLQAKASLEQQRRQFDKQTTYLKTDLSISPDDAL
EKPIAVIVSPSQGLKPIEKQLPTTTATYLKADDNKGGLKILPVNNIVIASAKAMISRDPR
LKMAPVPQENVGSTSIEDFTKQQQLVQQLKLQMQSKLNNEESFSLNDADKRMSELESASI
SNKNIDSKRAKDSNHKKEPSTTTTTITTTTTTITTTTDTMIPQRNSSNNIKDQLKGFSSK
NSSSRGSSLSLKTSSSSSSSSLRKVSTKSRSKLSYSSSVPNKIPKLEDNSSLLADKHLST
KKSKSRKVHSPSSISVTATSNGNANSSSYRIPRRTAAHESLIATAVCSSISGNNKSAFLQ
SEPDEEEQSSSIIVSPPHQPVMSFKEIRSNAKMRNYVRRNKEGSRSPEFNENTKNFTIPD
ASKDEDLRAPIVNVSVVAAGAALDTKEDLDLRVLTMPANKRKSSDLLDSTNVKRSKAEKF
DALFGNEDVDLRTLTNPKAGRPPTPPPPVISGDEQSKDNCWAKLKTPSKSERESMKPLLD
RNRDRLGRPRLYNKLISTXXXXXXXXRRNHCPLFSRDIDRHNERNADRNIEIIMKQAAEQ
LNQGTITKAQYNTLIQEVLHMSEDQKLRAAQRKEKEIGMLVWEKSVGIDNSTVAQGFGVS
NDENSLRKEHPAMLSRPPGQVGPRWQGPWHQPWTHPPPFSSGPHGFPSGPEGFRLLGPWQ
NHPRLFPGSIRSDFHPPYHGGFGPRMGPPPSMGPNGPVMISNGPMKPIVKSGPLNPLGTG
GPMGSIPPSLLVSNGPIRPETVVKRSSTSTLITPSMNNISNSTKMEIANDSLISTKNSGQ
LPQADPKLLEEIAKDTMKSINIDNVPREIRYYGNIGVVFMRWDDPRDIGFQDGARRIFID
GKDSILCNFNDDYREFSYEGEIHRIKLGTPTRELYINEKWYECYFGGRPITIDLGNKKIS
MKLDGPPPQVKIGNLKRTDLVIGKINLIINARNMVPVFLDSKPQVFEIDGKPCTLEFTDA
LQTVLLNGRPFKVEFGGLPKPIIIQNKKHFIRFSVLPRGFHAGYVKITGMKGEQPKEAPV
NDTLLETSQKMESITTTCEDKTSLNVPSDLDHDSILLDDMDVAINSKPDLQLDVLSSVVP
SAMAPSSGLSYQAEPVENSPTTVPALTLPLNLNELFQRLVETGIVPNLVETKKQEEEEEK
KQLEIILISFDKPETLKIKQPIIVMALYSGMQCSSCGARFAPEMATRYSHHLDWHFRQNR
KERDLARKAHSRPWYYDVSDWIQFEEIEDLEDRAQNWFETEKQTAETESISVEDVLQETQ
LPSVPTGSDEDSYCEVCHEAFEQFYNEEKEEWHLRPTICFEDKNYHPLCLEDHKSALEKS
AMVLEEAITEMEEETKKEDELKKIERNIKKEIKDKLIIELKPKENNSKEKEKMDAEIVDI
QKEEKIEDIDDSEPIEIIEPLPRKIELEEINDSSDDETIEEMKKEHRKNLLSDTIIKTQE
YNAYEKRIEEKIADNVPLIFENVKIKEEPIEYEIELEESIAEAAAVDTTQVAVKSTIDGN
VELDSATSTMPSAPSKIKINITKSLNHVTKELEEIKEKDKKLNETSMDPAPVKLLTPAAI
KSTLQGKKLSILPTVEKGYELSGLCSIM |
NT seq |
5667 nt +upstreamnt +downstreamnt
atgaagaggcttaaaaactatatatatttagtttatattacaaaaactaaatattatttg
aaaatgtccggaagcaacaactctaaaggtcacaactcagaggagattgttgaggaatat
atttcatctttattagaactgacaatcaacagcaaacctctgattaatatgcttacaatt
ttagcagaggattacattgatcatgccacagccattgttgaagcagttgaagtccatttg
caaaaggtgcgaagcgagatcaaacttcctgtactttatctcatcgattcgattgtcaag
aatgttaaccgagcctatcttagcctcttcacaaaaaatattgtcaatacgttttgcagt
gtttttgagaaggtggatgagaatacaagagctagtatgtggaaattacgtcagacgtgg
aatgaagtttttcctgcgaagaaattatttgcccttgacgtgcgggttcacaacatcgat
ccagcctggccgattacgccactacctcctagcagtgtatcaacaaaatcaattcatgta
aatccaaaattccttactatgcaaaagcaacaacaagcaactcaacagcctactatagga
gtgacccaacaggtcccgcaagtcccgccaccgacaacgatcgtgccggttattacagct
gcagtccatacatccgtaccagttgtaaagatatcaactggaaaacatgtatccacttct
gaggcggaaatgcgtgaacagttgctcaagaaacagaaagagcttatcgacttgcagaag
caaaaaattgagctggaattgctgcaggcgaaggccagtctcgagcagcaacgtaggcag
tttgacaaacagactacgtaccttaaaactgatttgtctatttcacctgatgatgcctta
gaaaagccaatagcagttattgtatcacctagtcaaggtttaaaaccaatagagaaacaa
ttacccacaacaacagctacctacttaaaagctgatgataataaaggcggcttgaagata
ttaccagtaaataatatagttattgcatcggcaaaggcaatgatatcgcgtgatcctcgt
ctgaagatggccccagtgccacaggaaaatgtaggatcaacgagcatcgaggattttacg
aagcaacaacagctcgtccagcaattgaaacttcaaatgcagtctaagctaaacaacgaa
gaaagtttttcattaaatgatgcggataagagaatgagtgagcttgagagcgcgagtatc
agtaataaaaatatcgacagtaaaagagcaaaagatagtaaccacaaaaaagaaccgagc
accacaactacaaccatcactaccaccactaccacgattactaccaccactgatacaatg
attccacagcgtaatagtagtaataatataaaagatcagttgaagggtttctcgtcaaaa
aactcttcttcacgtggtagtagcttatctttgaaaacctcatcttcctcgtcctccagt
tccttgagaaaagttagcactaaatcccgatcaaaattgtcttattcttcgtccgtgcca
aataaaattccaaagttggaggacaactcatcgctcttggctgataaacatttgtccacc
aaaaaatcgaagtcccgaaaagtccatagtcccagttcaatttcagtcaccgcgacgagc
aatggaaatgcaaatagttcatcctatcgaataccaaggcgcacagctgctcacgaatca
ttaatcgcaacagcggtatgcagtagtattagtggtaataataaatccgcattcctgcag
tccgaaccggatgaggaggaacagtcgagctcgataatagtctctccaccccatcaaccc
gtaatgagtttcaaagaaatacgctcaaatgccaagatgagaaattatgtgagaagaaac
aaagaaggaagtagaagtccggagtttaatgaaaacacgaagaatttcaccatacctgat
gccagtaaggacgaggatctgagagcaccgattgttaacgttagcgtggttgcagcgggt
gctgctcttgatacgaaagaagatttagatttacgagttcttacgatgccagctaataaa
aggaaatcatccgatttactagattctacgaatgtaaagagaagcaaggctgaaaaattt
gatgcattgtttggaaatgaagatgtggatttacgtacgttaacaaatcctaaagctggt
cgtccacctaccccaccgcccccagtaatatctggtgatgagcaaagcaaagataattgc
tgggctaaactaaagacgccttcgaagagcgaacgcgagtcgatgaaaccgttgttagat
cgcaatcgtgatcgcctcggccgtccacgtctctacaacaaactcatctccacnnnnnnn
nnnnnnnnnnnnnnnnagcgtcgtaatcattgtccattatttagtcgtgatatcgataga
cacaatgagcgcaatgctgaccgtaatattgagatcattatgaaacaggctgcagagcag
ttgaatcagggcaccattaccaaggctcaatacaatactcttattcaagaagtcttacat
atgagtgaagatcagaaactaagagcagctcaacgtaaagaaaaagaaattggcatgctt
gtgtgggaaaagagtgtgggtatagacaattccacagttgcccagggttttggagtgagc
aatgatgagaatagtttgcgtaaagagcatccggcaatgttgtcacgtccacccggtcag
gttggccctagatggcaagggccctggcatcagccctggactcatccaccaccattttca
tccgggccccacggttttcctagtggtccagaaggtttcagactattaggtccttggcaa
aaccacccacggctctttccagggtctataagatctgattttcatccaccatatcatggc
ggttttgggcctcggatgggtccaccaccttctatgggacccaatggaccggtaatgata
tcgaacgggccaatgaaacctatagtaaagagcggaccattgaatccactaggtacagga
ggtcctatgggatctattccaccaagtttgttggttagcaatggacccataaggccagag
acagtagtaaaaagatcatcaacctcaactctcattactccaagtatgaacaacattagt
aacagtacaaaaatggagatcgcgaatgatagtttgattagtactaagaatagtggacaa
ctaccacaagccgatcctaaactcttggaagaaatcgcaaaggatactatgaagtcaatc
aacattgataatgtacctagggaaattagatattatggaaatattggtgttgtgtttatg
aggtgggatgatccaagagatattggttttcaagatggtgctagaagaatcttcattgat
ggaaaagattcaattttatgtaactttaatgatgattatagagagttttcatatgaagga
gaaattcacagaattaaacttggaacacctacaagagaattgtacataaacgaaaaatgg
tatgaatgctattttggtggtcgaccaattactattgacttaggcaataaaaaaattagt
atgaaattggatgggcctcctcctcaagtaaaaatcggaaatcttaaacgtactgatctc
gttatcggaaaaatcaatctaattattaatgcaagaaatatggtaccagtttttcttgat
tccaaacctcaagtatttgaaatcgatgggaagccatgcacactggagttcacagatgcc
ttgcaaacagttctcctgaatgggcgtcctttcaaagtcgaatttggtggactgcctaag
cctataatcattcaaaataagaaacacttcatacgattttccgtactgccacgtggcttt
catgctggctatgttaagatcacaggtatgaagggtgaacaaccaaaagaggccccagta
aatgatacattgttagaaactagtcaaaaaatggagtcaattacgacaacatgtgaagac
aagacgagtctgaatgtaccatcagatcttgatcacgattcaatattacttgacgatatg
gatgtagcaataaacagcaaaccagatttacagttagatgtactatcatcggttgttcca
tcagcaatggcaccatcgtctggattatcttaccaagctgaacctgttgaaaattcacct
acaactgtaccagcacttacattgccacttaatcttaatgaattattccaaagattagtt
gaaactgggattgttccaaatcttgttgagacaaagaaacaagaagaagaagaagagaaa
aagcaactagaaattattctaatttcatttgataaaccagagacattaaaaataaaacaa
cccattattgtaatggcattgtatagtggtatgcaatgtagttcatgtggagcaagattt
gctccagaaatggctactcgttatagtcatcatttagattggcactttcgacaaaatcgt
aaagagcgagatttggcaagaaaagcacattcgagaccatggtactacgatgtcagcgat
tggattcaatttgaggaaattgaagatctcgaagacagagcacaaaattggtttgaaaca
gaaaaacaaacagctgaaactgaaagtatatcagtggaagatgttcttcaggaaacgcaa
ttacctagtgttcccactggatcagatgaagattcatattgtgaagtatgtcatgaagca
tttgaacaattttataatgaagaaaaagaggaatggcaccttagacctaccatttgcttt
gaagacaaaaactatcaccctttatgtcttgaagaccacaaaagtgctttggaaaaatca
gcaatggtacttgaagaggctataactgaaatggaagaagaaacaaaaaaagaagatgaa
cttaaaaaaatagaaagaaatataaaaaaagaaatcaaagataaattaataatagaatta
aaaccaaaagagaataatagtaaagaaaaagaaaaaatggatgccgaaattgttgatatt
caaaaagaggaaaaaatagaagatatagatgattcagagccaattgaaattattgaaccg
cttccaagaaaaattgagcttgaagaaataaatgactcttcagatgatgaaacaattgaa
gaaatgaaaaaggaacatagaaaaaatttattaagtgacacaataattaagacacaagaa
tacaacgcatatgaaaagagaattgaagaaaaaatagcagataatgttccattaatattt
gaaaatgttaaaataaaagaagaacctattgaatatgaaatagaacttgaggagagtata
gctgaggctgcagctgtagacacaacacaagttgcagtaaagagtactatcgacggcaac
gtggagctggactctgcaacgtcaacgatgccctctgcaccctctaaaatcaaaatcaat
attacaaaatctttaaatcatgtgacaaaggaacttgaagaaattaaggaaaaagataag
aaattaaatgagacttcaatggatcccgcacctgtgaagcttcttacacctgctgcaatt
aaatctacattgcaaggcaagaagttatcgatactaccgacagtagaaaaaggttatgaa
ctctcaggattgtgctcgattatgtaa |