Ceratosolen solmsi marchali (fig wasp): 105363073
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Entry
105363073 CDS
T06056
Name
(RefSeq) protein PAT1 homolog 1
KO
K12617
DNA topoisomerase 2-associated protein PAT1
Organism
csol
Ceratosolen solmsi marchali (fig wasp)
Pathway
csol03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
csol00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
105363073
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
csol03019
]
105363073
Messenger RNA biogenesis [BR:
csol03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
105363073
mRNA degradation factors
5'-3' decay
Decapping complex
105363073
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PAT1
Pyrid_ox_like
Motif
Other DBs
NCBI-GeneID:
105363073
NCBI-ProteinID:
XP_011498953
UniProt:
A0AAJ6YJ11
LinkDB
All DBs
Position
Unknown
AA seq
771 aa
AA seq
DB search
MQLLQMADSFFEFDTGFGVGSEDGSECLDDDDYGEENNYDALNDETFGSEATAGDWEQDH
EKLAQITEQSRPRNRNECSKSESEIDVENSLSHLVLDEKEVTIPRPGVWDSPTNFSIPPP
QIRLKPSLSTTLKNACTVEELERGLITNRPPPGLIKQSVSQTYLPTNMTGANIFVNSIAS
LDRLQQFNAVITALKQFPHVLPSNVRVAHPQFHLQNVRPLPNQPGNILRYPLPPPHLLMP
PGSQRQPPLHGNFPLNSFHHSPNSGIGPQTYLRPDHPLMPPYANNHQNMQQHNMHIGNQR
NQNKQLNHNDRQENHHQPFFRNNQYHHHNQNHINRYHPNHVHHGYPMHHYIMNHHQNHMG
SNGIGPSGEHDEYAGLMNNREKQWLNNIQLLQLNTNQPYIDDYYYTVFCDRLNKKNETKN
RNKINSQKSNNNIAGNNNNGYHRDSRDRDQPHHSFTKVASTPMQFENSLGKLQYSSVTAP
RKIIDMDVVPNSDPHQSQSVQQKDTKKTRQLLLEIERLYILLLKLEDKNNPLAIIADQQR
EQQQQESGETISESEPKDPVKEKEELILSIMSPFLQLIQEDKFASFLSIRKGKTLFLRFL
PCINVKENEFKLSKLWAAVIKGLTIIGRRDSHLLINFYTEFHKWVDENSISFLLLTNLAK
EFIESANQPSKNNSLTFALTNKFGISVISLMLKHAENLQCAYDVIYEPFTQQWPKFLRAI
IESLGTSSPVFSPCHVLDAEGLTSHLRRNGIESESQVAAFELFFTEANTAS
NT seq
2316 nt
NT seq
+upstream
nt +downstream
nt
atgcaattattacaaatggcagactctttcttcgaatttgatacaggcttcggcgttggc
tctgaagatggatccgaatgtctagacgacgacgattacggagaagaaaataattacgat
gcattgaacgatgaaacttttggatcggaagcaactgcgggtgattgggaacaagatcat
gaaaagctagcccaaatcactgaacaaagcagaccacgaaaccgtaatgaatgcagcaaa
agtgaatcggaaattgatgttgagaatagtctttcacatttggtactcgacgagaaagaa
gttactatacctcgacccggtgtttgggatagtccaacaaatttttctatacctccacct
caaattcgactaaaaccttcattatcaacaacgcttaaaaatgcatgtacagtggaagaa
ttggaaaggggacttatcactaatcgaccgccacctggtctcattaaacaatccgtgtcg
cagacttatctacctacgaacatgactggtgctaacatatttgttaactcgatagcatcg
ctagatagactgcaacaatttaatgctgtgattacagctctgaaacaatttccccatgtt
cttccctcaaatgttagagtagcacatccacaatttcatcttcaaaatgttcgaccattg
cctaatcaacctggaaatattcttagatatccattaccacctccacatttactaatgcca
cctggaagtcaaagacaaccaccacttcacggcaattttccacttaacagttttcaccat
tcacctaattctggtataggaccacagacatacttgagaccagatcatccattgatgcca
ccttacgcaaacaatcatcagaatatgcaacaacacaatatgcacatcggaaatcagaga
aatcaaaataaacaattaaatcataatgatcgtcaggaaaatcaccaccaaccctttttc
agaaataatcaatatcatcatcataatcagaatcacataaataggtaccatcccaatcat
gttcaccatggatatccaatgcaccattatattatgaaccatcatcaaaatcacatggga
agtaatggcataggaccatccggtgaacacgatgaatacgcaggattgatgaataacagg
gaaaaacagtggctgaataatatacaattactacagttaaatacaaatcagccgtatatt
gacgattattactatacggttttttgtgatcgattaaataagaaaaacgaaacaaaaaat
cgcaataaaattaacagccaaaagtctaacaacaatattgcaggaaataataataatgga
tatcacagggattcaagggacagagatcaacctcatcattcctttactaaagttgctagt
actccgatgcagtttgaaaactctttgggaaaattgcagtacagtagtgttacagctcca
agaaaaattattgacatggatgtcgttcctaatagtgatcctcatcaaagtcaatctgtt
caacaaaaggatacaaagaaaactcggcaacttcttttagaaatcgaaaggctttatata
ttgctattaaaacttgaggacaagaataatcctttagctataatagctgatcagcaacgc
gaacaacagcaacaggagagtggcgaaacaatctctgaatctgaacctaaggaccctgtg
aaagaaaaagaagaacttattttatctataatgtcaccatttttgcaacttattcaagaa
gataaatttgccagctttcttagtattcgcaaaggcaaaacattatttcttcgattttta
ccgtgcattaacgttaaggagaatgaattcaaactgtccaaattatgggctgcagttatc
aaaggtttaacaatcattggacgaagggattctcatttgttgattaatttttataccgaa
tttcacaaatgggtggatgaaaattctataagcttcctgttgttgaccaatttagctaaa
gaattcatcgagtctgcaaatcagccatcaaaaaataatagccttacatttgcgcttaca
aataagtttggcatatcagtgatatcactgatgctgaaacatgccgaaaatttacaatgc
gcatacgacgttatatacgagcccttcactcagcaatggccgaaattcctgcgtgctatt
atcgagtctctaggaacgagttcgcctgttttctcaccctgtcacgttcttgatgccgaa
ggcttgacgagccacctacgacgtaatggcattgagtcagaatcacaggttgcggcattt
gagctctttttcacggaggccaataccgcttcataa
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