| Entry |
|
|---|
| Name |
(RefSeq) DNA-directed RNA polymerase II subunit RPB1
|
|---|
| KO |
|
|---|
| Organism |
csol Ceratosolen solmsi marchali (fig wasp)
|
|---|
| Pathway |
|
|---|
| Brite |
KEGG Orthology (KO) [BR:csol00001]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
105363368
09124 Replication and repair
03420 Nucleotide excision repair
105363368
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:csol03021]
105363368
03400 DNA repair and recombination proteins [BR:csol03400]
105363368
Enzymes [BR:csol01000]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
105363368
Transcription machinery [BR:csol03021]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
105363368
DNA repair and recombination proteins [BR:csol03400]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
105363368
|
|---|
| SSDB |
|
|---|
| Motif |
|
|---|
| Other DBs |
|
|---|
| LinkDB |
|
|---|
| Position |
Unknown
|
|---|
| AA seq |
1905 aa
MATSDSKATLRTVKRVQFGILSPDEIRRMSVTEGGIRFAETMEGGRPKLGGLMDPRQGVI
DRNSRCQTCAGNMTECPGHFGHIDLAKPVFHCGFITKTIKILRCVCFFCSKMLVSPHNPK
IKEIVMKTKGQPRKRLTFVYDLCKSKNICEGGDEMDITKDGQELDPNKKPGHGGCGRYQP
NLRRSGLDVTAEWKHVNEDSQEKKIALTAERAWEILKHITDEESFILGMDPKFARPDWMI
VTVLPVPPLAVRPAVVMYGSAKNQDDLTHKLSDIIKSNNELLRNEQAGAATHVISENIKM
LQFHVATLVDNDMPGMPKAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITP
DPNLRIDQVGVPRSIAQNLTFPEIVTPFNIDKMQELVRRGNTRYPGAKYIVRDNGDRIDL
RFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQPTLHKMSMMGHRVKVLPWSTFRMNLSCT
SPYNADFDGDEMNLHVPQSMETRAEVENIHVTPRQIITPQANKPVMGIVQDTLTAVRKMT
KRDVFIEKEQMMNILMFLPSWDGKMPQPCILKPKPLWTGKQIFSLIIPGNVNMIRTHSTH
PDDEDEGPYKWISPGDTKVMVEHGELIMGILCKKTLGTSAGSLLHICMLELGHEVCGRFY
GNIQTVINNWLLLEGHSIGIGDTIADPQTYMEIQKAIKKAKEDVIEVIQKAHNMELEPTP
GNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVG
QQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAMGGREGLID
TAVKTAETGYIQRRLIKAMESVMVHYDGTVRNSVGQLIQLRYGEDGLCGETVEFQNLPTI
KLSNKAFEKKFKFDPSNERYLRRIFSEDIVREMMGSGEVISELEREWEQLNKDRAALREI
FPSGESKVVLPCNLQRMIWNVQKIFHINKRAPTDLSPMRVIQGVKDLLEKCIIVAGEDRL
SKQANENATLLFQCLVRSTLCTKCVSEEFRLSSEAFEWLIGEIETRFQQAQCAPGEMVGA
LAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLTVFLTGAAAR
DAEKAKNVLCRLEHTTLKKVTANTAIYYDPDPQNTVISEDQEFVNVYYEMPDFDPTKISP
WLLRIELDRKRMTDKKLTMEQIAEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSEDNKF
TDTTDIEESVDKMEDDMFLRCIESNMLSDMTLQGIEAIGKVYMHLPQTDSKKRIVITETG
EFKAIAEWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSVEKEMNAVL
QFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDVLLDAASHA
EVDPMRGVSENIIMGQLPRIGTGCFDLLLDAEKCKQGIEIPMAVGANIMGGTGMFFGNAT
TPSMSPQMTPWLGATPSYGAAGMSPSIGSGMTPGGACFSPSGQSDASGLSPAYSAYSPQP
GSPGSPGPSMSPYPMSPAGGASPSYSPTSPAYLPTSPSMTPSSPNYSPTSPTYSPTSPNY
SPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTS
PSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSFT
PASPSYSPTSPSYSPSSPQYSPASPSYSPSSPKYSPTSPSYSPTSPSFAGTSPQYTPASP
TYSPTSPTYSPTSPSYSPSSPQHSGGSTKYSPSSPNYSPTSPTYSPTSTKYSPTSPTYSP
TSHSYSPTSPSYSPTSPAYSPQVPGYSPTSPTYSAASPTYETDDN |
|---|
| NT seq |
5718 nt +upstreamnt +downstreamnt
atggctacgtcagattcaaaggcgacattgcgaacagtgaaaagagttcaattcggtatt
ttatcaccagatgagattcgccgtatgtcagttacagagggtggcatacgttttgccgag
accatggaaggtggccgtcccaagcttggtggtcttatggatcctagacagggtgtaatt
gatagaaactctcgatgtcaaacttgtgctggtaacatgacagaatgtcctggccacttt
ggacatattgatttagcaaaaccagtttttcattgtggttttataacaaaaacaattaaa
attcttagatgtgtttgctttttttgttcaaaaatgttagttagtcctcacaatccaaaa
attaaagaaatagttatgaaaacaaaaggccaaccacgtaagcgcttaacatttgtttat
gatctttgtaaaagtaaaaatatttgtgagggtggtgatgaaatggatataactaaagat
ggtcaggagctagatcccaataaaaaaccaggtcatggtggttgtggtcgttaccaacca
aatttaagaagatctggacttgatgtaactgctgaatggaagcatgtcaatgaagattct
caggaaaaaaaaattgccttgactgcagaacgtgcatgggaaattttgaagcatataact
gatgaagaatcctttatccttggaatggatcctaagtttgcacgacctgattggatgatt
gtaactgtacttccagttccaccgctagcagtaagaccagctgtagttatgtatggttca
gcaaagaatcaagatgatctaactcataagctttctgatataataaaatctaataatgaa
ttattaagaaatgaacaagcaggagcagcaacacatgttatatctgaaaatataaagatg
ttacagtttcatgttgcaacacttgttgataatgatatgccaggtatgccaaaagcaatg
caaaaatctggaaaacccctaaaagctattaaagctcgattaaaaggtaaggagggccgt
attcgtggcaaccttatgggcaaacgtgtcgatttttcggcgcgcactgtcattacacct
gatccaaatttgcgaattgaccaagttggtgtacctcgtagtattgctcaaaatttaact
tttcctgaaattgtaactccatttaatatcgataaaatgcaagaacttgtacgaagagga
aatactcgatatcctggtgcaaaatatattgttcgtgataatggtgaccgtattgatttg
cgatttcatccaaaaccttcagatcttcatttgcaatgtggttataaggtcgaaagacat
attagagatggtgatttggtcatttttaatcgtcagccaactcttcataaaatgagtatg
atgggtcacagggtaaaagttttaccttggagtacatttcgtatgaatttaagctgtact
tcaccttataatgctgactttgatggggatgagatgaatttacatgttcctcagtctatg
gaaactcgcgctgaggtggaaaatattcatgttactccaagacaaatcatcactccacaa
gccaataagccagtcatgggaattgtacaagatacattgacagctgttagaaaaatgact
aagagagatgtttttattgagaaggaacaaatgatgaacattcttatgttcttgccaagc
tgggatggaaaaatgccccagccttgtattttaaaacctaaacctttatggacgggtaaa
caaatattttcacttatcattcctggaaatgtaaatatgatacgaacacatagtacgcac
ccggatgatgaggatgaaggtccttataaatggatatctcctggagatacaaaagttatg
gttgaacacggagaattaataatgggaattttgtgtaaaaaaacacttggtacttcggct
ggttctctattacatatctgtatgctggagttaggtcacgaagtttgtggaagattttat
ggtaatattcaaacagtaattaataattggttattacttgaaggacattctattggtatt
ggggatactatagctgaccctcagacttacatggaaattcagaaggctattaaaaaagct
aaagaagatgtcatagaagttattcaaaaggctcataatatggaattagagccaacacct
ggtaatacattgaggcagacttttgaaaatcaagtaaatagaattcttaacgatgctcgt
gataaaactggtggttctgctaaaaaatctcttactgaatacaataacttaaaagctatg
gtagtttcaggttctaaaggatccaatattaatatatcccaggttattgcctgtgtcggg
caacaaaacgtcgaagggaagcgcataccttttggttttcgcaaacgtactctaccacat
tttatcaaagatgattatggtccagaatctagaggctttgttgagaattcatatcttgcg
ggtctgactccatccgaattttacttccatgctatgggaggtcgcgagggtctcattgat
actgctgtaaaaactgcagaaactggatatattcaacgtcgtctcataaaggcaatggaa
tcagttatggtgcactatgatggcacagtaagaaactcagtgggccaacttattcagtta
cgttatggtgaagatgggctttgtggcgaaactgttgaatttcagaatttaccaaccatt
aaattaagcaataaagcgtttgaaaaaaaatttaagtttgatccaagcaatgagaggtat
ttgagacgcatttttagcgaggatatcgtgcgtgaaatgatgggttctggtgaagtcata
tccgaattagaacgtgagtgggaacaactaaataaggatagagctgcactacgagaaatt
tttcctagtggtgaatcaaaagttgtactaccgtgcaacttacaacgtatgatttggaat
gttcagaagatatttcatattaataaacgagcaccaacggatttgagtccaatgagagtt
attcaaggtgtaaaagatcttctagaaaagtgtataatcgtagcaggtgaggatcgttta
agtaaacaggctaatgaaaatgctacattgttatttcaatgtcttgtacgttctactctt
tgtactaaatgcgtttctgaagaatttcgtttatcaagtgaagcttttgagtggcttata
ggagaaatcgagactaggtttcagcaagctcaatgtgctccaggagaaatggtaggtgct
ttagcagcccaatctcttggagagcctgctactcaaatgacattaaatacttttcatttt
gctggcgtatcctcaaagaatgtaactctgggagtaccaagactaaaagaaataattaat
attagcaaaaagccaaaggctccttctctaacagtcttcttaactggtgctgcagcaaga
gatgccgaaaaagctaaaaacgttttatgtcgtcttgaacatacaactttgaaaaaagtg
acagcaaatactgcaatatattatgatccagatccacaaaatactgtgatttcagaagat
caggagtttgttaatgtttattatgagatgccagactttgatccaactaagatttcacca
tggcttcttcgcatcgagcttgatcgtaaaagaatgactgataagaaactcactatggaa
caaattgcggaaaaaattaatgcaggctttggagatgatttgaattgtattttcaatgat
gacaatgctgaaaaacttgtactacgaattagaataatgaatagtgaagataacaaattt
acagatacaactgatatagaggagagtgttgacaaaatggaagacgatatgtttttgcgt
tgtattgaatctaatatgttaagtgatatgactttacagggtattgaagccattggaaag
gtgtatatgcatttaccacagacagactctaagaaaagaatagttattacagaaacaggt
gagtttaaagctattgctgagtggttgctagaaactgatggcacaagtttaatgaaagta
ctcagtgaacgagatgtggatccagtgagaaccttttctaatgatatttgtgaaatcttt
caagtgttaggtatcgaagccgtgcgaaaatctgtagaaaaagaaatgaatgctgtttta
caattttatggtctctacgtgaactatcgacatttggccttactttgtgatgttatgaca
gccaaaggtcatcttatggctattacacgtcacggtattaatagacaggatacaggagca
cttatgagatgttcatttgaagagacagtagatgtattattagatgcagcttctcatgct
gaagttgatcctatgagaggcgtttctgaaaatattattatgggtcaactaccacgtatc
ggaacaggctgctttgatcttttactcgatgccgaaaaatgtaagcaaggaattgagata
ccaatggctgtaggagcaaacataatgggtggtaccggtatgttctttggaaatgctaca
actccaagtatgagtcctcaaatgacaccttggttgggcgcaacaccaagttatggagcg
gcaggtatgtcgccgagtattggtagtggcatgacacctggaggagcctgcttttcacct
tctggccaatctgatgcgtcgggactgtcaccagcatattctgcttattcaccacaacct
ggaagtcctggaagtccaggtccaagtatgagcccatatccaatgtctcctgctggtgga
gcctcaccgagctattcaccaacttctccagcttatttgcccacttctcctagcatgaca
ccatcaagtccaaattattcgccaacaagtccaacttactcaccaaccagtcctaattat
tcaccaacaagtccaagttattcaccaacaagtccaagctattctccaaccagtccaagc
tattcacccaccagtccaagttattctccaactagtccgagttattccccaactagtccc
agttattcaccgacaagtcctagttattcccctacaagtcctagctattcaccaacaagt
ccaagttattccccaactagtccaagttattcacctaccagtcccagttattcaccaaca
agtccaagttattcaccaacaagtccaagctattcccctacaagtcctagttactcacca
acaagtccaagttattctccaacaagtccaagctattcaccaactagtccaagctttaca
ccagcctcaccatcttattcacctacctcaccttcttactcaccatcatcacctcaatat
tctccagcctctccaagttattctccatcttcacctaagtactcaccaactagccccagc
tattctcctacttcaccttcatttgccggaacatcaccccaatatacccctgcaagtcca
acatactcacctacaagcccaacttattcacctactagccccagttattcacccagctca
cctcaacatagcggtggtagtactaaatattctcctagtagtcctaattattcaccaaca
agtccaacttactctccaaccagtaccaagtactcaccaactagcccaacatattcacca
acgagtcatagttactcaccaacaagtccaagttattcaccaacaagtccagcttactct
ccacaagtgcctggatactctccaacgagtccaacttattcagcggcctcaccaacttac
gaaactgatgataattaa |
|---|
