Ceratosolen solmsi marchali (fig wasp): 105365779
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Entry
105365779 CDS
T06056
Name
(RefSeq) ATP-dependent RNA helicase WM6
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
csol
Ceratosolen solmsi marchali (fig wasp)
Pathway
csol03013
Nucleocytoplasmic transport
csol03015
mRNA surveillance pathway
csol03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
csol00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
105365779
09122 Translation
03013 Nucleocytoplasmic transport
105365779
03015 mRNA surveillance pathway
105365779
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
csol03019
]
105365779
03041 Spliceosome [BR:
csol03041
]
105365779
Enzymes [BR:
csol01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
105365779
Messenger RNA biogenesis [BR:
csol03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
105365779
Spliceosome [BR:
csol03041
]
Complex C
Other components
EJC/TREX
105365779
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
105365779
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
Cas3-like_C_2
P-loop_SecA
Motif
Other DBs
NCBI-GeneID:
105365779
NCBI-ProteinID:
XP_011502327
UniProt:
A0AAJ6YQC0
LinkDB
All DBs
Position
Unknown
AA seq
425 aa
AA seq
DB search
MADNDDLLDYEDEEQTEQIVEGNGEVVPAKKEVKGTYVSIHSSGFRDFLLKPEILRAIVD
CGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLELTENQVYVLVMCHT
RELAFQISKEYERFSKYMPQVKVSVFFGGLPIQKDEEVLKNTCPHIVVGTPGRILALIKS
KKLSLKHLKHFVLDECDKMLEQLDMRKDVQEIFRSTPHGKQVMMFSATLSKEIRPVCKKF
MQDPMEVYVDDEAKLTLHGLQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVQRCMA
LAQLLTEQNFPAIGIHRGMTQEERLTRYQSFKDFQKRILVATNLFGRGMDIERVNIVFNY
DMPENSDTYLHRVARAGRFGTKGLAITLVSDEGDAKILNDVQERFDVNITELPDEIDLAS
YIEGR
NT seq
1278 nt
NT seq
+upstream
nt +downstream
nt
atggcagataacgatgatcttttggattatgaagatgaagagcagactgaacaaattgtg
gaaggcaatggagaagttgtccctgctaaaaaagaagttaaaggaacatatgtttcaata
catagtagtggttttagagatttcttattaaaacctgaaattttacgtgcaattgtagat
tgtggttttgaacatccttcagaagttcaacatgaatgcattccacaagctgttcttggt
atggatattctttgccaagcaaaatctggtatggggaaaacagcagtctttgttttagct
acattacaacaactggaattaactgaaaatcaagtttatgttcttgtgatgtgtcataca
agagaattagcatttcaaatcagcaaagaatatgagagatttagcaaatatatgccacaa
gtaaaggtatcagtattttttggaggtctaccgattcagaaagatgaagaagttttaaaa
aatacatgtcctcacatagttgttggaacaccaggacgtattttagctcttattaaaagt
aaaaaactcagtttaaagcatcttaaacattttgttcttgatgaatgtgataaaatgctt
gaacaacttgatatgcgcaaagatgtgcaagagattttccgaagcactcctcatggtaaa
caagttatgatgttcagcgctacactatctaaggagattcgtccagtctgcaagaaattc
atgcaagatccaatggaggtctatgtggatgatgaagctaaacttacacttcatggctta
cagcaacattatgtcaagcttaaggaaaatgaaaaaaataaaaaattatttgagctcctt
gatgtgcttgaatttaatcaagttgtaattttcgttaaatcggtacaaaggtgtatggct
cttgcacaacttcttactgaacaaaatttccctgcaattggtattcatagaggaatgacg
caagaggaacgattaaccagatatcaatcgtttaaagattttcaaaagcggattttagta
gctacaaatctttttggacgtggtatggatattgaacgagtaaatattgtgttcaattat
gatatgccagaaaattctgatacttatcttcatcgtgtagctcgagcaggacgctttggc
acaaagggattggctataactttagtcagtgatgaaggagatgctaaaattttaaatgat
gtacaagaacgctttgatgtaaacataactgaattacctgatgaaatagatttagcctcg
tacattgagggacgataa
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