Ceratosolen solmsi marchali (fig wasp): 105365880
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Entry
105365880 CDS
T06056
Name
(RefSeq) putative U5 small nuclear ribonucleoprotein 200 kDa helicase
KO
K12854
pre-mRNA-splicing helicase BRR2 [EC:
5.6.2.6
]
Organism
csol
Ceratosolen solmsi marchali (fig wasp)
Pathway
csol03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
csol00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
105365880
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
csol03041
]
105365880
Enzymes [BR:
csol01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
105365880
Spliceosome [BR:
csol03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
105365880
Complex C
U5 SnRNP specific factors
105365880
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Sec63
WHD_SNRNP200
DEAD
Helicase_PWI
ResIII
Helicase_C
BRR2_plug
AAA_22
AAA_30
HTH_61
AAA_16
UvrD-helicase
nSTAND3
DEXQc_Suv3
Motif
Other DBs
NCBI-GeneID:
105365880
NCBI-ProteinID:
XP_011502445
UniProt:
A0AAJ6YQM0
LinkDB
All DBs
Position
Unknown
AA seq
2133 aa
AA seq
DB search
MADAAARQLQYEYKANSNLVLQADVRLIERRSRDEATGEVMSLVGKLDGTRMGDRAQRTK
PGKAEERKVKRQKRDEAQYDFTHSKGATVLSESIDEMVGIIYRPKTQETRQTYEILLSFI
QEAIGDQPRDILCGAADEVLSVLKNDKLKEKEKKRETEQLLGSLAEERFALLVNLGKKIT
DFGNDEKSGTGEENIDETYGINVQFEESSEEDDEDVYGEVRENEDEVDEGEEANDDRAIH
AENLGRAEEMKKEKTLHPRDIDAYWLQRQLKAIYNDAMISHAKAGDVLDVLKSAADDRDC
ENQLVLLLGYDCFDFIKQLKKYRHMIAYCTMLASSQSESERSKIRKKMSEDPSLTKILHQ
LETGKGDVDNDETMEARAQRKRREENEDTGGPGGLVQGTRNIIDLEDIAFAQGSHFMPNK
RCHLPDGSFRKQRKGYEEVHVPALKPKPFSENEKLISITDLPKFVQPAFEGFKTLNRIQS
RLQKCALEEDENLLLCAPTGAGKTNVALLCIMREIGKHVNPDGTINADDFKVIYVAPMRS
LVQEMVGNFGKRLTSYNLTVSELTGDHQLTREQIAATQVIVCTPEKWDIITRKGGEKTFT
SLVRLIIIDEIHLLHDERGPVLESLVARTLRNIETTQEEVRLVGLSATLPNYQDVATFLR
IKPESGLYYFDNSFRPVALEQQYIGVTEKKALKRFQVMNEVVYEKTMDHAGKNQILIFVH
SRKETGKTARAIRDMCLEKDSLGQFLREGSASMEVLRTEAEQVKNMELKDLLPYGFAIHH
AGMTRVDRTLVEDLFADRHIQVLISTATLAWGVNLPAHTVIIKGTQIYNPEKGRWVELGA
LDVLQMLGRAGRPQYDTKGEGILITNHSELQYYLSLLNQQLPIESQLISKMSDMMNAEVV
LGTIQNVRDAVTWLGYTYLYIRMLRCPSLYGITYEKLREDPLLELHRADLVHSAAIALDR
SGLIKYDRKSGNFQATELGRIASHYYCTHDTIATYNQLLKRTLSEIELFRVFSLSSEFKH
INVRDEEKIELHKLMERVPIPIKENMEEPSAKVNVLLQAYISQLKLEGFALMSDMVYVTQ
SASRLMRAIYEIVLFRGWAQLADKCLSLCKMVDRRMWQSMSPLRQFRKMPEEIIKKIEKK
NFPWERLYDLGPNEIGELIRIPKLGKTIHKYIHQFPKLELSTHIQPITRSTLRVELTITP
DFMWDDKAHGASEAFWILVEDVDSEVILHHEFFLLKAKYANDEHLIKFFVPVFEPLPPQY
FLRVVSDRWIGAETQLPVSFRHLILPEKNLPPTELLDLQPLPITALRNSIFENLYIDKFP
QFNPIQTQVFNAVYNSDDNIFVGAPSGSGKTTIAEFAILRLISQNSEGRCVYMVSKEALA
ELIYKDWIFKFGKSLKKVVLLTGETGTDLKLLAKGQIIITTADKWDVLSRRWKQRKNVQN
IHLFIVDELQLLGGEDGPVLEVACSRARYISSQLDKPTRIVALSSSLADAKDIAQWLGAP
AASTFNFHPSVRPVPLELHVQGINITHNASRLAAMAKPVYNAILRHAPRKPVIIFVPTRK
QARLTAFEILTFTAAESKPLQFFHAEEADIKPFLDRIVDTTLRDTLSQGVAYLHEGLSNN
DKKLVEQLFDSGAIQIAVATRELCWSLSIYSYLVVIMDTQCYNGKSHAYEDYPITDVLQM
VSLANRPHEDDDAKCVMLCQSSKKDFFKKFLNEPLPVESHLDHRLHDHFNAEIVTKTIEN
KQDAVDYLTWTFLYRRLTQNPNYYGLQGVTHRHLSDHLSELVENTLSDLEQAKCVTVEDE
MDVTPLNLGMIAAYYYINYATVEMFDGSLNAKTKIRGLLEIISAAAEYESIPVRQREENL
LRNLAVRLPHAPQAQRMADPHIKAQLLLQAHLSRIQLGPELQKDTELVLNKSIRLIQACV
DVLSSSGWLAPAVSAMELAQMMTQAMWSKDSYLKQLPHFTIDIIKRCTDKGVETVFDIME
LEDDVRNRLLQLNEIHMMDVAKFCNRYPNIEMAYDVQDKENIRHGDSVNVIVQLEREDEV
IGPVVAPFFPQKREEGWWVVIGDPKSNQLLSIKRLTLQQKATVKLDFLAPAPGQHNYTLY
FMSDAYLGCDQEYKFSINVGEYESDVSSVSESD
NT seq
6402 nt
NT seq
+upstream
nt +downstream
nt
atggcagatgctgcagctagacaattacaatacgagtacaaagcaaattctaatcttgtt
ttgcaagctgatgttcgattaatagaaagacgaagtagagatgaagctacaggtgaagtt
atgtctcttgtgggtaaacttgatggaacgagaatgggtgatagagcacaaagaacaaaa
ccaggaaaagcagaagaaagaaaagtaaaacgacaaaagcgagatgaagctcaatatgac
tttacacatagtaagggagcaaccgttctgtctgaaagtattgatgaaatggttggtatt
atatatagacccaaaactcaagaaacacgtcaaacatatgaaattttactaagttttatt
caagaagctattggtgaccaaccacgtgatatactttgtggtgcagcagatgaagtttta
tcagttttaaaaaatgataaactgaaagaaaaagaaaaaaagagagaaacagaacaactt
ctcggaagtttagctgaagaaagatttgcattgttagttaatttgggaaaaaaaataaca
gatttcggtaatgatgagaaaagtggtacaggtgaagaaaatattgatgaaacttatgga
attaacgtacagtttgaagaaagtagtgaagaagatgatgaagatgtgtatggtgaagtt
agagagaatgaagatgaagtagatgaaggtgaagaagcaaatgatgatagagctattcat
gcagaaaatttaggtagagcagaagaaatgaaaaaagaaaaaaccttgcatccaagagat
attgatgcttattggcttcaaaggcaattgaaggcaatatataatgatgcaatgatttca
catgctaaagcaggagatgtcctagatgtactgaaaagtgctgcagatgatcgtgactgt
gaaaatcagcttgtactattacttggttatgattgttttgattttattaaacaattgaaa
aagtacagacatatgattgcttactgtacaatgttggcatcgtctcaatcggagtcggaa
cgttcaaaaattcggaagaaaatgagtgaggatccaagtcttacaaaaatactccatcaa
cttgaaactggtaaaggtgatgttgataatgatgaaactatggaagctagagctcaacgt
aaacgacgagaagaaaatgaagatacaggaggccctggtgggttggtacaaggaacaaga
aatattattgatctagaagatattgcatttgcacaaggaagccactttatgccgaataaa
cgatgtcatttaccagatggtagttttaggaaacaacgtaaaggatatgaagaagttcat
gtacctgctttaaaaccaaaaccattttctgaaaatgaaaaacttatatccataacagat
cttcctaagtttgtccaaccagctttcgaaggttttaagactctgaatcgtattcaaagt
cgtttacaaaaatgtgctttggaagaagatgaaaatcttttattatgtgcccctacagga
gctggtaaaacaaatgttgctttattgtgtataatgcgtgaaattggcaagcatgtaaat
cctgatggtactattaacgctgacgattttaaagttatttatgtagcaccaatgcgttct
cttgtacaagaaatggttggtaattttggaaagagacttacatcatacaacttaacagtt
tcggaattgacaggtgatcatcagttaactagagaacaaatagctgcaactcaggtgata
gtttgtactccagaaaaatgggatattattacgagaaaaggaggcgaaaaaacatttact
tctctcgtgagattaatcattattgatgagatacatttacttcatgacgaacgaggtcca
gttctcgaatcattagtagcaagaacacttcgaaatattgaaacaacacaagaagaggtc
agattagttggcttatcagctactttgccgaattaccaggatgtagcaacgtttttacga
attaaacctgaaagtggcctctattattttgataatagtttcaggcctgtagcattggag
caacagtacattggtgtgaccgagaaaaaggcacttaaacgattccaggttatgaatgag
gttgtatatgaaaaaacaatggatcatgcaggtaaaaatcagattttaatatttgtacat
tcaagaaaagagactggaaaaacggctcgcgccatcagagatatgtgtcttgaaaaagat
agtttaggacagtttctcagagaaggatcagcatcaatggaagttttaagaactgaagct
gaacaagtaaagaatatggaactaaaggatttactgccatatggttttgcaattcatcat
gcaggaatgacaagagttgaccgtactttggtggaggatctttttgcggatagacacata
caggtgttaatttctacagccactctagcatggggtgtcaatctaccagcacatacagtc
attattaaaggaacacaaatttacaatccagaaaaaggacgatgggtcgaattaggagct
ttagatgttttgcaaatgctaggtcgagctggtcgccctcaatatgatacaaaaggagaa
ggtattcttataacgaatcatagtgagcttcaatactacctttcattgctcaatcagcag
ctaccaatagaatcccaacttattagtaagatgtcagatatgatgaatgcggaagtggtc
cttggaacaattcaaaatgttcgtgatgcggtcacttggctaggttatacgtatctttat
attagaatgctccgttgtcctagtctatatggaattacctatgaaaagttgcgggaagat
cctctgttagaactacatcgtgcagatttggtacattcagctgctatagccttagatcgc
agtggccttataaaatatgaccgcaaatctggtaattttcaagctacagaattgggaaga
atcgcctcccattattattgcacacatgatacgattgctacctacaatcagttattgaaa
cgaactctcagtgaaatagagctatttcgcgtattttcactttccagtgaattcaaacat
atcaatgttagggatgaagaaaagatagaactgcataagctaatggaacgcgttcctata
cccatcaaggaaaatatggaggaacctagcgcgaaagttaatgtattactccaggcatat
atatctcagctgaaactcgaaggattcgctttaatgtcagatatggtgtatgtaacccaa
tcggcctctcggctaatgcgtgcaatttacgaaatcgtactatttcgaggttgggctcaa
ttggctgataaatgtttatcactttgcaaaatggtagatcgcagaatgtggcaatcaatg
tcaccactgcgtcaatttcgcaaaatgccagaagaaattattaaaaaaatagaaaagaaa
aacttcccttgggaaagattgtatgacctgggacctaatgaaattggcgaacttatacgc
ataccaaagttaggaaaaactattcataagtatattcatcaatttccgaaacttgaactc
tcaacacatatacagccaatcactagatcaactcttagagttgaactcacaataacacca
gatttcatgtgggatgataaagctcatggtgcatctgaggctttttggatcctcgttgaa
gatgttgattcagaagttattctgcatcacgaatttttcctcttaaaggctaagtatgca
aatgacgaacatttaattaaattttttgtgccggtatttgaacccctaccacctcaatac
tttttacgggtagtatcagacagatggataggagctgagacacagttacctgttagtttt
agacatttaatactaccagaaaaaaatctaccgccaacagagttattggatttacagcca
ctacctatcactgcccttcgaaattcgatctttgaaaatttatatattgacaaattccca
cagtttaatcctatacaaactcaggtattcaacgcagtttataattcagatgataatata
tttgtgggtgcacctagtggatccggtaaaacaactattgcagaatttgcaatattacgt
cttatatctcaaaattcagaaggtcgatgtgtatatatggtgagcaaggaagcacttgct
gaacttatatataaagattggatatttaaatttggtaaaagtttaaaaaaagttgtatta
ctaactggtgaaactggtacagatcttaaattgcttgctaaaggacagataattattaca
acagcggataaatgggatgtattatcgcgtagatggaaacagcgtaaaaacgttcaaaat
attcatttatttatcgttgatgagctacaacttctagggggagaagatggccctgttttg
gaagtggcttgttccagagctaggtatatatcatctcaactagacaaaccaactcgaata
gtcgcgctttcgagttccctcgccgatgccaaggatatagcccaatggctgggtgcacca
gctgctagtacttttaattttcatccatcagttcgaccagtacctcttgagcttcatgtt
cagggtattaatattactcacaatgcatcacgtcttgctgctatggctaagcccgtatat
aacgctattcttcgtcacgcaccaagaaagcctgttattatttttgtaccaactcgcaaa
caagcaagattaacggcttttgaaatactaacctttactgcagctgaaagtaaaccttta
caattctttcatgctgaagaagcagatatcaaaccctttttagatcgaatagtagataca
actctaagagatactttatctcaaggagtagcttatttgcatgaaggcttatctaataac
gacaaaaaattagtggaacagctatttgatagtggagcaatacaaattgcagtcgctaca
agagaactctgttggagtttatccatttattcttatcttgtagttattatggatacacaa
tgttacaatggtaaaagtcatgcttatgaagactatcctattactgatgtacttcaaatg
gtttccctcgccaatcgtcctcatgaagatgatgatgctaaatgtgtaatgctttgtcaa
agttctaaaaaagacttttttaaaaagtttttaaatgaaccattaccagttgaaagtcat
cttgatcatagacttcacgaccattttaatgcggagattgtcactaagactattgaaaat
aaacaagacgccgtagattacttaacttggacgtttctttatcgacgacttactcagaat
cctaattattatggattacaaggggtaactcacagacatttatcagatcatctgtcagag
ctagtggaaaatactctaagtgatttagaacaagctaaatgcgtaactgtagaagatgaa
atggatgtaacaccgctaaatttgggcatgatagctgcatactattatataaattatgca
actgtagagatgtttgatggctcactcaatgccaaaacaaaaatacgcggtttattagaa
attatctcagctgccgctgaatatgaatctattccagtaaggcaacgcgaagaaaatcta
cttagaaatttggctgtaagattaccgcatgcaccgcaagctcaaaggatggctgatcca
catataaaagctcagttacttcttcaagcgcatctttccagaatacaattaggaccagaa
ttgcaaaaggatacggaattagtgcttaacaaaagcatcagattaattcaagcatgcgtt
gatgttttgagttcatcaggttggctagcacctgctgtctcagctatggaattagcgcaa
atgatgacacaagccatgtggtcaaaggattcctatttaaagcagttgccacatttcaca
attgacataattaagagatgtactgataagggtgtggaaaccgtttttgatattatggag
ctagaagacgatgtacgaaatcgattattacaactaaatgaaatacatatgatggacgtc
gctaagttttgtaatcgatatccgaacattgaaatggcatatgatgtccaagataaagaa
aatataaggcatggggattcagtaaacgtaattgttcaattagaacgtgaagacgaagta
attggaccagtagtagcacctttttttccacaaaagagagaagaaggatggtgggttgtt
attggtgatccaaaatcaaatcaacttttgtcaattaagagattaactctgcaacagaaa
gccactgtaaaattggacttcttggcacctgcaccagggcaacacaattatacattatac
tttatgagtgatgcctatctgggatgtgatcaggaatacaagttttccattaatgtagga
gaatatgaatcagatgttagttcagtttcagaatcagattaa
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integrated database retrieval system
