Cetobacterium somerae: MKD34_03295
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Entry
MKD34_03295 CDS
T08261
Symbol
recJ
Name
(GenBank) single-stranded-DNA-specific exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
csom
Cetobacterium somerae
Pathway
csom03410
Base excision repair
csom03430
Mismatch repair
csom03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
csom00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
MKD34_03295 (recJ)
03430 Mismatch repair
MKD34_03295 (recJ)
03440 Homologous recombination
MKD34_03295 (recJ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
csom03400
]
MKD34_03295 (recJ)
DNA repair and recombination proteins [BR:
csom03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
MKD34_03295 (recJ)
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
MKD34_03295 (recJ)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
MKD34_03295 (recJ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DHH
RecJ_OB
DHHA1
Motif
Other DBs
NCBI-ProteinID:
UPO97876
LinkDB
All DBs
Position
735483..738002
Genome browser
AA seq
839 aa
AA seq
DB search
MMRNTKWIFKSEKFRSINDNLDKEIEQILYNRGIESKDEVEFFINGTLENLMNPSDLSDV
DKGVERILKAKENNETIWIYGDYDVDGITSTSLCYLALKELEINVKYYIPLRDEGYGLNK
DALNYIKEEGGNLIITVDCGISSISEVEHCNALGMDMIITDHHEINNELPPAHAIVNPKR
EDNKNSYKYFAGVGTAFMLLLALYKKLDKKNEIYKYLDIVAIGTIADIVPLKGENRLLVK
RGLELLKSSKWQGLNMLMKRLFENPMEKKFDTYDVGFIIAPIFNAAGRLEDAKMAVELFV
SNCHITCDKLIYELINKNSERKEIQEEILKKAIDKIENEKLDENSVIVVAEKKFHHGVIG
IVASKILDRYYKPTIIMEIKPLEGIATASCRSTEAFNMIEALNSMRDIFIKYGGHAGAAG
FSIAIENIEEFSKRMNEYAVENLNSEDTKKPIKIDCELSMIKISFDLMDKLSLLEPYGFG
NASPMFAIRNCKYTNFRAIGKEKNHLMMDLIKNGVEMKNCVWFNSEDMLETILNNKEIDV
AFKLKMETYKDKYQYKIFIEDIKPSKKIMNDIKDLESLYNLKFPIKSIFYTRRDLENEKL
NISFINEEVSINIGRNSIGFLDNQTKLILKKLNDYYGYRFNVKIDKIIRKDENYNVHIWI
HKDDEFKTLSFETGKIFKEIKEFLIGDLEYNSLQKKVLKTIFKDKKNVVVSCKPGRGMDT
VVKTIEMYYKMLGKKVLIVKEGKRREEGYDFYVYMGNEVLEVSDYNLFVTNNKIYCDTVE
YIEDDYKIPSNVEVVSIDELEYHENIFSIMLPLKDKKRIIESMNKGEKIFASEDIRTIL
NT seq
2520 nt
NT seq
+upstream
nt +downstream
nt
atgatgagaaatacaaaatggatatttaaatcagaaaagtttagaagtataaatgataat
ttagataaagaaatagaacaaattttatataatagaggaattgaatcaaaagatgaagtt
gaatttttcataaatggaacattagaaaatttaatgaatccaagtgatttatcagatgta
gacaaaggagttgaaaggatattaaaagctaaagaaaataatgaaacaatttggatatat
ggtgattatgatgtagatggaataacatcaacatccctttgttatttagcactaaaagag
ttagagattaatgtaaagtactatattccactaagagatgaaggatatgggttaaacaag
gatgctttaaattatataaaggaagagggcggaaatttaataataacggttgattgtgga
atttcatctatttctgaagttgaacattgtaatgctttgggtatggatatgattataaca
gatcatcatgagataaataatgaactgccacctgctcatgcaattgtaaatcccaaaaga
gaagataataaaaactcttataaatattttgcaggagttggaacagcttttatgttatta
cttgctctgtataagaaattagataaaaaaaatgaaatatataaatatttagatatagta
gctattggaacaatagctgatatagttccattaaagggagaaaatagacttttagttaag
agaggattagagcttttaaaaagtagtaagtggcaagggttaaatatgcttatgaagaga
ttgtttgaaaatcctatggagaaaaaatttgatacatatgatgtcggatttataatagct
cctatttttaatgctgctggaagattagaagatgctaaaatggcagtggaactttttgtt
agtaattgtcatataacatgtgataaattaatatatgaattaataaataaaaatagtgag
agaaaagagattcaagaagaaattttaaaaaaagctatagataaaattgaaaatgaaaaa
ttagatgaaaatagtgtgattgttgttgcagagaaaaaattccatcatggcgttataggg
atagtagcttcaaagattctagataggtattacaagcctactattattatggaaataaag
ccgttagaagggatagcaacagcttcatgcagaagtacagaagcttttaatatgatagaa
gctttaaattcgatgagagatatctttattaaatatggtggacatgcaggagcggctggt
ttttccattgctattgaaaatatagaggagttttcaaagagaatgaatgaatatgctgtt
gaaaatttaaatagtgaggatacaaaaaaacctataaaaatagattgtgagctttcgatg
ataaaaatatcttttgatttaatggataagttatctttattagaaccatatggttttggg
aatgcttcaccaatgtttgcgattagaaattgtaaatacacaaactttagggctattggt
aaagaaaaaaatcatttaatgatggatttaataaaaaatggagtagaaatgaaaaattgc
gtatggtttaatagtgaagatatgcttgaaactatacttaataataaagagattgatgta
gctttcaaacttaaaatggagacatataaagataaatatcaatataagatttttatagaa
gatataaaaccatctaaaaagattatgaatgacataaaggatttagaaagtttatataat
ttaaagtttcctataaaatctattttttatacaagaagagatttggaaaatgaaaagtta
aatattagttttattaatgaagaagtttctattaatattggaagaaatagtattgggttt
ttagataatcaaacaaaattaattttaaaaaaattgaatgattattacgggtatagattt
aatgttaagattgataaaataataagaaaagatgaaaattataatgttcatatttggata
cataaagacgatgaatttaaaactttatcttttgaaactggaaaaatatttaaagagata
aaagagtttttaataggagatttagaatataattcgttacaaaaaaaagttttaaaaacg
atatttaaagataagaaaaatgtagttgttagctgtaaaccaggaagaggaatggataca
gttgtaaaaacaatagagatgtattataaaatgcttggaaaaaaagtattaattgtaaaa
gaggggaagagaagagaagaaggttatgatttttatgtttatatgggaaatgaagtttta
gaagtgagtgattataatttatttgtaacaaataataagatttattgtgatactgttgaa
tatatagaagatgactataaaattccttcaaatgtagaagtagttagcatagatgagtta
gaatatcatgaaaatatttttagtataatgcttccattaaaagataaaaaaagaataatt
gagagtatgaataaaggagaaaaaatatttgcttctgaagatataagaactattttataa
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