Cetobacterium somerae: MKD34_06215
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Entry
MKD34_06215 CDS
T08261
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
csom
Cetobacterium somerae
Pathway
csom03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
csom00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
MKD34_06215
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
csom03019
]
MKD34_06215
03009 Ribosome biogenesis [BR:
csom03009
]
MKD34_06215
Enzymes [BR:
csom01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
MKD34_06215
Messenger RNA biogenesis [BR:
csom03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
MKD34_06215
Ribosome biogenesis [BR:
csom03009
]
Prokaryotic type
rRNA helicases
MKD34_06215
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
DUF2000
FAS_I_H
AAA_30
Flavi_DEAD
AAA_22
Cas3-like_C_2
HU-HIG
VP16-like
2H-SAK
AAA_19
DUF5751
Motif
Other DBs
NCBI-ProteinID:
UPO96757
LinkDB
All DBs
Position
complement(1362211..1363797)
Genome browser
AA seq
528 aa
AA seq
DB search
MEKILTFRDLGLTEKTLKPLEKKGFEQPSPIQALTIPALLNGDKDIIGQAQTGTGKTAAF
SLPILEKIEKSTGHVQAIILAPTRELAVQVAEEMNSLAHGRKLKIIPVYGGQSLEQQKRQ
LNKGVDIVVGTPGRVMDLMNRQVLKLNNIDYFILDEADEMLNMGFVEDIEHILTQTNEDK
RMLFFSATMPAEILKIAKSHMREHEVLAVKKKELTTNLTEQIYFEVKEKDKFEALCRIID
IELDFYGIVFCRTKNDVNELVGKLQDRGYDVEGLHGDISQNHREVTLRRFKNKNLNILIA
TDVAARGIDVNDLTHVINYAIPQEAESYVHRIGRTGRAGKQGTAITFITPSEYRKLLQIQ
RITKTEIKKEQVPGVKDVILAKKTRLFDSVRNIISNGDAESYYDMAKELLTQETTPIEVI
AAILKNFYDEELEETNYSDIESVSLDKTGKTRLFIALGKKDKMTPRKLVDLISKKTKVHE
SKLKGVEVYENFSFVSVPFVEAETIVDIFQKDRKGKKPLIEKAKQSRK
NT seq
1587 nt
NT seq
+upstream
nt +downstream
nt
atggaaaaaatattaacatttagagatttaggtttaactgaaaaaactttaaagcctcta
gaaaaaaaaggttttgaacagccaagtccaatacaggctttaactataccagcattacta
aacggagataaggacataattggtcaagcacaaacaggaacaggaaaaactgcagcgttc
tctttaccaattcttgaaaaaatagagaaaagtacaggacatgtacaagctataatatta
gcaccaacaagagagttggcggttcaagtagctgaagagatgaactcattagcacacgga
agaaaattaaaaataattccagtttatggaggacaatcattagagcaacaaaaaagacaa
cttaacaagggtgttgatattgttgtaggtactccaggaagagtaatggatttaatgaac
agacaagttttaaaattaaataacattgattatttcatattagacgaagcagatgagatg
ttaaatatgggattcgttgaggatatcgagcatatcttaactcaaactaacgaagataaa
agaatgttatttttctcagcaactatgccagcagaaattttaaaaatagcaaaatctcat
atgagagagcatgaagtattagcagttaagaaaaaagaattaacaacaaacttaacagag
caaatttactttgaagtaaaagagaaagataaatttgaggctttatgtagaataattgat
atcgagttagatttctatggaattgttttctgtagaactaaaaatgatgttaatgaactt
gtaggaaaattacaagatagaggatatgatgttgaaggattacacggagatatcagtcaa
aatcacagagaagttactttaagaagatttaaaaataaaaacttaaatattcttattgca
acagacgtagcagcaagaggtatagatgtaaatgatttaacacatgttataaactatgca
attcctcaagaggcagaaagttacgtacatagaattggaagaacaggaagagctggaaag
caaggtacagcaataacatttataactccatctgagtatagaaagttacttcaaattcaa
agaataacaaaaacagagattaaaaaagagcaagttccaggagtaaaggatgtaatctta
gctaagaaaactagattatttgatagtgttagaaacattatatcaaatggagatgcagaa
tcttactatgatatggcaaaagagttattaactcaagagacaactccaattgaagttata
gcagctatattaaagaatttctatgatgaggaattagaagaaacaaactactctgatata
gagagtgtttcacttgataaaacaggaaagacaagattatttatagctcttggtaagaaa
gataaaatgactcctagaaagttagttgatttaatatctaaaaagactaaagttcacgaa
tcaaaactaaaaggtgtagaagtatatgagaacttctcatttgtttctgttccattcgtt
gaagctgaaacaatagttgatattttccaaaaagatagaaaaggaaagaaacctttaatc
gaaaaggcaaaacaatcaagaaagtaa
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