Cetobacterium somerae: MKD34_07875
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Entry
MKD34_07875 CDS
T08261
Symbol
rnr
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
csom
Cetobacterium somerae
Pathway
csom03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
csom00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
MKD34_07875 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
csom03019
]
MKD34_07875 (rnr)
03016 Transfer RNA biogenesis [BR:
csom03016
]
MKD34_07875 (rnr)
Enzymes [BR:
csom01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
MKD34_07875 (rnr)
Messenger RNA biogenesis [BR:
csom03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
MKD34_07875 (rnr)
Transfer RNA biogenesis [BR:
csom03016
]
Prokaryotic type
tRNA degradation factors
MKD34_07875 (rnr)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
OB_RNB
CSD2
OB_Dis3
DUF6642
OB_HELZ2
Motif
Other DBs
NCBI-ProteinID:
UPO97051
LinkDB
All DBs
Position
1692182..1694332
Genome browser
AA seq
716 aa
AA seq
DB search
MKTSTKLDKQLDKLKNILKNSKALTLDEITKAMGWSPKFKKENREILEIWINSGEIMKNK
RNKYNIPENLGFIKGKFSNIKGKFGFVDTDTEGYFIPRSKFGTALDGDTVLINVTTPEGK
GKKEGEIVEVLVREKNTIIGIFEKKENFGFVRPTQSFGRDIYIPKNFFNKAKDGELVVVD
VTFWGSDEKKPEGKILESIGNPFDTDNMIKALILREGLSEEFPDDVIAEARQIPTVISED
EIKKRKDLRHLPIITIDGDDAKDLDDAVYVEKLDNGYYKLIVAIADVSHYIPTGSKLDKE
AEKRGNSVYLVDRVLPMFPKEISNGICSLNPHEDKLTFSVELLIDPHGRAIDVQTYKSVI
KTAHRMTYGNVNKIIAKDPETTEKYSDIADMLFTMLELSKIIRAIKYNRGSIDFDLPEVK
VILDENKKVKYLKNIERGESERIIEDFMIMANEAVAEKLFWLEIPSVYRVHETPDPERVK
TLSETLSRFGYRLHSFEDIHPKKFQSIIEDSEARGINMIVHKMILMSLKQARYGVENLGH
FGLSSNYYTHFTSPIRRYADLLIHRILNIAIHGYPTKKQFGTLINYLPEVTQHISQTERK
AMKVEDESIKIKIVEYMLDKIGDEFKATIVGFNNKKIFFETEEHVECFWDVTTAKNFYEF
DENNYVMKDLDTNREFHLGDKMDILIVRSDLQMLEIEVVPTEFCNEYTGRRKEGRF
NT seq
2151 nt
NT seq
+upstream
nt +downstream
nt
atgaaaacaagtacaaaattagataaacaacttgataaattaaaaaatatattaaaaaat
agcaaagctttaactcttgatgaaataactaaagctatgggatggtctccaaaatttaaa
aaagaaaatagagaaattcttgaaatttggattaattctggagagattatgaaaaataaa
agaaacaaatataatattcctgaaaatttaggttttatcaaaggaaaattttccaatatt
aaaggaaagttcggttttgttgatactgatactgagggatactttatccctagaagtaaa
tttggaacagctttagatggagatactgttttaataaatgttacaacacctgaaggaaaa
ggaaaaaaagaaggagaaattgttgaagttcttgtaagagaaaaaaacacaattatagga
atctttgaaaaaaaagaaaattttggttttgtaagaccaacacaatcttttggtagagat
atatatattcctaaaaactttttcaataaagctaaggatggagaattagttgttgttgac
gtaactttttggggaagcgatgaaaaaaaacctgaaggaaaaattctcgaatcaattggt
aaccctttcgatacagacaacatgattaaagctttaattcttagagaagggttatcagaa
gaatttccagatgatgttattgcagaggctcgtcaaatcccaactgtaatatctgaggat
gaaataaagaaaagaaaagatttaagacaccttccaataataacaattgatggtgacgat
gctaaagacttagatgatgctgtttatgttgagaaattagataatggatattataaactt
attgtagctattgctgatgtttctcactatatcccaactggatctaaattagataaagaa
gctgaaaaaagaggaaattctgtttatttagttgacagagttttaccaatgttccctaaa
gaaatttcaaatggaatatgctctttaaatccacatgaagataaacttacattctctgtt
gaacttcttattgatcctcatggaagagctatcgatgttcaaacatataaatcagttatt
aaaactgctcacagaatgacttatggaaatgttaataaaattattgctaaggatcctgaa
actactgaaaaatatagtgatatcgcagatatgctatttactatgttagaactttctaag
attataagagctatcaaatataacagaggttctattgattttgatcttcctgaagttaaa
gttattttagatgaaaataaaaaagttaaatacttaaaaaatattgaaagaggagaatca
gaaagaatcatcgaagactttatgattatggctaatgaagctgttgcagaaaaacttttc
tggttagaaataccttctgtttacagagttcatgaaactcctgacccagaaagagtaaaa
actttaagtgaaactctttctagatttggatatagacttcactcttttgaagatattcat
cctaaaaaattccaatcaattattgaagattctgaagccagaggtatcaatatgattgta
cacaaaatgattttaatgtctcttaaacaagctagatacggtgttgaaaacttaggacat
tttggcctatcatctaattattatacacattttacatctcctattagaagatacgctgat
ttactaatacatagaattttaaatattgctatacatggttatccaactaaaaagcaattt
ggaactcttataaactatttaccagaggttacacaacatatctctcaaacagaaagaaaa
gctatgaaagtagaagatgaaagtattaaaattaaaatagttgaatatatgcttgataaa
attggagatgaatttaaagctactatagttggatttaacaataaaaaaatattctttgaa
acagaagaacatgtagaatgtttctgggatgtaactacagctaaaaacttctatgaattt
gatgaaaataattatgttatgaaagatttagatacaaatagagagtttcatttgggagat
aaaatggatattttaatagttagatctgatttacaaatgcttgaaatagaagttgtccca
actgaattttgtaatgaatatacagggagaagaaaagaggggagattttaa
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