Cetobacterium somerae: MKD34_08020
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Entry
MKD34_08020 CDS
T08261
Symbol
rny
Name
(GenBank) ribonuclease Y
KO
K18682
ribonucrease Y [EC:3.1.-.-]
Organism
csom
Cetobacterium somerae
Pathway
csom03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
csom00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
MKD34_08020 (rny)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
csom03019
]
MKD34_08020 (rny)
Messenger RNA biogenesis [BR:
csom03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
MKD34_08020 (rny)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_Y_N
HD
KH_1
HDOD
KhpA-B_KH
LapA_dom
DUF4407
Neur_chan_memb
Motif
Other DBs
NCBI-ProteinID:
UPO97079
LinkDB
All DBs
Position
complement(1720816..1722381)
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AA seq
521 aa
AA seq
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MNLMLGVGLAIVGFAIIFSIMYKKSTIDKKIEELNNLEDEKLKAKIKAKEILERAEKESL
AKSKEIEIKAKETVYQMKEEAEKEIKIAKNELLQKEGRLAKKEETLESKIEKVESRAVEL
EEINQHLENKKTEIEDLKKVQEETLERISEMTRNEAKEMLISKLKDDLVHETALAIREYE
NKLEDEKDRLSKRILSTAIGKASSEFVADATVSVVNLPNDEMKGRIIGREGRNIRTIEAL
TGVDIIIDDTPEAVVLSSFDGVKREVARRAIEKLINDGRIHPGKIEEVVNKSRKEIDKDI
IEAGEQALLELGIPGMHMEIIKTLGKLKYRTSYGQNVLTHSIEVAKLAANLAAELGADTK
LAKRAGLLHDVGKVLDHDIEASHAIIGGEFLKKFGEKPAVINAVMAHHNEVEFESVEAIL
VQASDAISASRPGARRETLSTYLKRLEGLEEIATSFDGVESSYAIQAGREIRIIINPEIV
SDDAATKMARDIAKRIEETMQYPGQIKVTILRETRAVEYAK
NT seq
1566 nt
NT seq
+upstream
nt +downstream
nt
atgaacttaatgttaggagttggattagctatagttgggtttgcaataatatttagtatt
atgtataaaaaatctactatagataagaagatagaggagcttaataacttagaagatgaa
aagttaaaagctaaaataaaagctaaagaaatattagaaagagcagaaaaagaatcttta
gcaaaaagtaaagagatagaaataaaagcgaaagaaacagtttaccaaatgaaagaggaa
gctgaaaaagagataaagatagcgaaaaatgagttgttacaaaaagagggaagattagct
aaaaaagaggaaactttagagtctaaaatagaaaaagttgaaagcagagctgtagagtta
gaagagattaaccaacacttagaaaataagaaaactgaaatagaagacttaaaaaaggtt
caagaggaaactttagaaagaatttcagaaatgacaagaaatgaagctaaagagatgtta
atttctaaattaaaagatgatttagttcatgagactgctttagcaataagagaatatgag
aataaattagaagatgaaaaagatagattgtcaaaaagaattctatcaacagcaatagga
aaggcttcttcagaattcgttgcagatgctactgtatcagttgtaaatttaccaaatgat
gaaatgaaaggtagaattataggtagagaaggaagaaacataagaacgatagaggcttta
acaggtgtagatataataatagatgatactccagaagctgttgttttatcaagttttgat
ggtgtaaaaagagaagttgctagaagagcaattgaaaaacttataaatgatggaagaatt
catccaggtaagatagaagaggttgttaataaatctagaaaagaaattgataaagatatt
atcgaagctggagaacaggctcttttagagttaggaattccaggaatgcatatggaaatt
attaaaacattaggtaagttgaaatatagaacaagttatggtcaaaatgttttaactcac
tcgatagaggtagctaaattagctgcaaatctagcagctgagttaggtgcagatactaag
ttagcaaaaagagctggacttctacatgacgtaggaaaagttttagatcatgatatagaa
gcttctcatgcaataattggaggagagttcttgaaaaaatttggtgaaaaaccagcagtt
ataaatgctgttatggctcatcataacgaagttgaatttgaaagtgtagaggctatttta
gttcaagcatcagatgcaatatcagcttcaagaccaggagcaagaagagaaacattatca
acatatctaaaaagattagaaggattagaagagatagcaacttcatttgatggagtggaa
tcttcttatgcaattcaagctggtagagagataagaattataataaatccagaaattgta
tcagatgatgcagctacaaaaatggctagagacatagctaagagaatagaagagactatg
cagtatccaggacaaataaaagtaacaatattaagagaaactagagctgtagagtacgct
aaataa
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