Corynebacterium simulans: WM42_0292
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Entry
WM42_0292 CDS
T04316
Symbol
rho
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
csp
Corynebacterium simulans
Pathway
csp03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
csp00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
WM42_0292 (rho)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
csp03021
]
WM42_0292 (rho)
03019 Messenger RNA biogenesis [BR:
csp03019
]
WM42_0292 (rho)
Transcription machinery [BR:
csp03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
WM42_0292 (rho)
Messenger RNA biogenesis [BR:
csp03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
WM42_0292 (rho)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ATP-synt_ab
Rho_RNA_bind
Rho_N
Spore_III_AA
AAA_25
SAP
NACHT
AAA_22
S1CSD-TOTE-2
Motif
Other DBs
NCBI-ProteinID:
AMO88046
LinkDB
All DBs
Position
complement(293375..295165)
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AA seq
596 aa
AA seq
DB search
MSNTDKAAAQDYASMKLPELRKLAAERGLRGISGLRKGDLITALSTGQVPAKAEKAEKPQ
RRTRKPAEEKSAKAEDNAKDSGEDKTQEKGEKNEEQRYESRSQARRARRNRARRQERENA
EAKQEGAKEEAKEPNKDSENSNDNRDNNNRDNRDNGERNRGNRNRRHDDDDNNGGGRRNR
RNRRNRRNRGGNDNNGGNDLQIREGDEVQAVGGILEVVDNNVAFLRTTGYRAASSDVFVN
NNLVRRLGLRSGDAVTGQVKVSGPTHTHGNGRNRRKYNQLVQVDTVNGMEPAAAQDRPHF
SKLTPLYPNQRLRLETDPKILTTRVIDLIMPIGKGQRALIVSPPKAGKTTILQNIANAIS
ANNPECYLMVVLVDERPEEVTDMQRSVKGEVIASTFDRPPSEHTSVAELAIERAKRLVEQ
GKDVVVLLDSITRLGRAYNNSSPASGRILSGGVDSNALYPPKRFLGAARNIENGGSLTII
ATAMVETGSTGDTVIFEEFKGTGNAELKLDRAISERRIFPAVDVNPSGTRKDELLLVPEE
ARIMTKLRRILSGLDSFAAIDLLIKQLKKTRSNGEFLMQVASSAPMVADKEAEDYI
NT seq
1791 nt
NT seq
+upstream
nt +downstream
nt
gtgagcaatacggacaaagccgcagcacaggattacgcatccatgaagctgccggaactg
cgcaagctggctgccgagcgcggcctgcgcggcatctcgggtctgcgcaagggcgatctg
atcaccgccctgagcactggccaggtccctgcgaaggcagaaaaggcggaaaagccacag
cgccgcacacgtaagcccgctgaagagaagtcggcaaaggctgaggataacgccaaggat
agtggcgaagacaagacccaagaaaagggtgagaagaacgaggagcagcgctacgagtca
cgctcccaggctcgccgtgcccgccgcaaccgcgcccgccgccaggagcgcgagaacgcc
gaggcaaagcaggagggcgctaaggaagaggccaaggagccgaacaaggattccgagaac
tctaacgacaatcgcgataacaataaccgtgacaaccgtgataacggcgagcgcaaccgc
ggcaaccgcaaccgccgccatgatgacgatgacaacaacggtggcggccgccgcaaccgc
cgcaaccgtcgcaaccgccgcaaccgcggtggtaatgacaacaacggcggcaacgatctc
cagatccgcgagggcgatgaagtccaggcagtaggcggcatcctcgaggtcgtcgacaac
aacgtggctttcctgcgcaccaccggttaccgcgcggcaagctctgacgtctttgtcaac
aacaacttggtccggcgcttgggcctgcgctctggcgacgccgtgaccggccaggtcaag
gtctctggcccaactcatacccacggcaatggccgtaatcgccgcaagtacaaccagttg
gtgcaggttgacacggtaaacggcatggagccagcagcggcacaggaccgtcctcacttc
tccaagctgaccccgctgtacccgaaccagcgtctgcgcctggaaacggatccgaagatc
ctgaccacccgcgttatcgacctcatcatgcctatcggcaagggccagcgtgcgctgatt
gtttccccgccgaaggccggtaagaccaccattttgcagaacatcgccaacgcgatttcc
gcaaataacccagagtgctacctcatggtcgtcctagtagacgagcgcccagaagaggtc
accgacatgcagcgcagcgtcaagggtgaggtcattgcctctaccttcgaccgcccgcca
tcagagcacacctccgttgccgagctggccatcgagcgcgcgaagcgcttggtggagcag
ggcaaggacgtcgtggttctcctggactcgattacccgcctgggccgtgcttacaacaac
tcctccccagcatccggccgcatcctctccggtggtgtggactccaatgcgctctaccca
ccgaagcgcttcctgggtgctgcccgcaatatcgaaaacggcggttcccttaccatcatc
gccaccgcgatggtggagaccggctccaccggtgacacggtcattttcgaggagttcaag
ggcaccggcaacgccgagctcaagctcgaccgcgccatttccgagcgtcgcatcttcccg
gccgtggacgttaacccatccggcacccgcaaggacgagctgctgctcgttccggaggaa
gcgcgcatcatgaccaagctgcgtcgcatcctttctggtttggattccttcgccgctatc
gacttgctcatcaagcagctgaagaagacccgctccaacggcgagttcttgatgcaggtg
gcaagctcggcgccgatggtcgctgacaaggaagctgaggattacatctaa
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