Corynebacterium simulans: WM42_0339
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Entry
WM42_0339 CDS
T04316
Name
(GenBank) helicase domain protein
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
csp
Corynebacterium simulans
Pathway
csp03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
csp00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
WM42_0339
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
csp03019
]
WM42_0339
03009 Ribosome biogenesis [BR:
csp03009
]
WM42_0339
Enzymes [BR:
csp01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
WM42_0339
Messenger RNA biogenesis [BR:
csp03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
WM42_0339
Ribosome biogenesis [BR:
csp03009
]
Prokaryotic type
rRNA helicases
WM42_0339
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
adh_short
UvrA_inter
Cas3-like_C_2
AAA_22
PIN_9
Motif
Other DBs
NCBI-ProteinID:
AMO88092
LinkDB
All DBs
Position
complement(349292..351283)
Genome browser
AA seq
663 aa
AA seq
DB search
MSITDNATGGVNEPEEINKSESQEISQGDVETTGAANNPEDTGAENTSANDNSQGFATLG
LPDDVQQAVAKVGFTQPSPIQEQTIPILMEGRDVVGLAQTGTGKTAAFALPVLSQVDPEV
RHPQALVLAPTRELALQVADSFQSFADHLGRIEVLPIYGGQAYGIQLSGLRRGAQIIVGT
PGRVIDHLEKGSLDISQLRFLVLDEADEMLNMGFQEDVERILEDTPEEKQVALFSATMPN
SIRRLSKQYLNDPAEVTVKSERRTNDNITQRYLLTPHRQKMDAFTRILEVIEYDAIIVFC
RTKHETEEVADNLRDAGYNAAAINGDIAQQQRERTVDQLKDGRLDILVATDVAARGLDVE
RITHVVNYDIPNDTESYVHRIGRTGRAGRTGEAILFVTPRERRMLRSIERVTNARLEEMD
LPSADEVNEKRKEKFLAKIGESLGEKQFEFFRDMVREYSAANNVAMDDIAAALAVQLQGG
KDFLLKEQPAPKRDRRDRDRFDRGDRCDRGGRGGFRDRDRDRDRGPRRPDGDFETYRLDV
GKRQNVRPGAIVGALANEGGLSSKDFGRITIAVGHTLVDLPKNLDRAVLDRLKDTRISGQ
LINIAKDTGRPPRRDGDDRGGRGGRGGYRDDRRGGRGRRDDRGGRGGRGGYRDRDDRRGG
WRD
NT seq
1992 nt
NT seq
+upstream
nt +downstream
nt
atgagcattaccgataacgccaccggcggcgtgaacgagccggaagaaatcaataagtcg
gaatctcaggaaatctcgcaaggtgacgttgaaaccaccggggctgcgaataaccctgag
gacaccggcgctgaaaatacttcagccaacgacaattcccaggggtttgcaactctcggc
ctgcctgacgatgttcagcaagccgttgcgaaggtcggctttacccagccatccccaatc
caggaacaaaccatcccgatcctgatggaaggccgcgacgtcgtgggcctcgcccagacg
ggtaccggaaagaccgcagctttcgcgctgccggttctatcccaggtcgacccagaagta
cgccacccacaggcactggttctcgccccaacgcgtgaacttgccctgcaggttgcggac
tctttccagtcctttgctgatcacctgggccgcatcgaggtgctgccaatctacggtggt
caggcatacggcattcagctttctggtctgcgccgtggcgcccagatcatcgtcggcacc
ccaggccgcgtcatcgaccacctggagaagggctccctggatatttcccagctgcgcttc
ctggtcctcgacgaggcagacgagatgctgaacatgggcttccaggaagacgttgagcgc
atcctggaagacactccggaagaaaagcaggtcgcgctgttctcggcaacgatgccgaac
tccatccgccgcctgtctaagcagtacctcaacgatcctgctgaggtaacggtcaagtct
gagcgccgcaccaatgacaacatcacgcagcgctaccttttgaccccacaccgtcagaag
atggatgccttcacccgcatcctcgaggtcatcgagtacgacgccatcatcgtcttctgc
cgtacgaagcacgagaccgaagaggtcgctgacaatttgcgcgacgctggctataacgcg
gctgcaattaacggcgacatcgcccagcagcagcgtgagcgcaccgttgaccagctcaag
gatggccgcttggacatcctcgtggctaccgacgtcgccgctcgtggcctggacgttgag
cgcatcacccacgtggtcaactacgacatcccgaacgacaccgagtcttacgtgcaccgc
attggccgtaccggccgtgcaggccgtaccggtgaggcgatcctgttcgtcaccccgcgt
gagcgccgcatgctgcgctccatcgagcgcgtaactaacgcccgcctcgaggaaatggac
ctgccttccgctgacgaggtcaacgagaagcgcaaggaaaagttcctggccaagatcggc
gagtccctgggcgagaagcagttcgagttcttccgcgacatggtccgcgagtactctgca
gcgaacaacgttgccatggatgacatcgccgcagcgcttgcagtccagctgcagggcggc
aaggacttcctgctcaaggagcagccagcgccgaagcgcgaccgccgtgaccgcgaccgt
tttgatcgtggggatcgctgcgaccgcggtggacgtggcggcttccgtgaccgcgaccgc
gatcgtgaccgtggcccgcgccgcccggacggtgactttgagacctaccgcctggacgtc
ggcaagcgccagaacgtgcgcccaggcgccatcgtcggtgctctggccaacgagggtggc
ttgtcctccaaggactttggccgcatcaccattgcagtgggccacactctggttgacctg
ccgaagaaccttgaccgcgcagtgctggaccgtctgaaggacacacgcatctccggccag
ctgattaacatcgccaaggacaccggccgcccgccgcgccgcgatggcgatgaccgtggc
ggacgcggcggccgtggtggttaccgtgatgatcgtcgcggaggccgtgggcgccgtgac
gaccgtggcggacggggtggccgtggtggctaccgtgaccgtgatgaccgtcgtggcggt
tggcgcgactaa
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