Corynebacterium simulans: WM42_0990
Help
Entry
WM42_0990 CDS
T04316
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase, beta' subunit
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
csp
Corynebacterium simulans
Pathway
csp03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
csp00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
WM42_0990 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
csp03021
]
WM42_0990 (rpoC)
03400 DNA repair and recombination proteins [BR:
csp03400
]
WM42_0990 (rpoC)
Enzymes [BR:
csp01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
WM42_0990 (rpoC)
Transcription machinery [BR:
csp03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
WM42_0990 (rpoC)
DNA repair and recombination proteins [BR:
csp03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
WM42_0990 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Motif
Other DBs
NCBI-ProteinID:
AMO88732
LinkDB
All DBs
Position
complement(1001030..1005022)
Genome browser
AA seq
1330 aa
AA seq
DB search
MFDVNLFDELRIGLATADDIRRWSKGEVKKPETINYRTLKPEKDGLFCERIFGPTRDWEC
ACGKYKRVRYKGIICERCGVEVTKSKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL
APKDLERIIYFAANIITSVDEEARHNDQSTLEAEMLLEKKDVEEDTESEIAERAAKLEQD
LAELEAAGAKAEARRKVQNAADKEMQHIRERGEREVARLDEIWNTFLKLAPKQMIIDETI
YEELVDRYEDYFTGGMGAEAIQTLIRNFDLEAEAEELREVINNGKGQKKMRALKRLKVVA
AFLRSGNDPAGMVLDAIPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRMIDL
GAPEIIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK
RVDYSGRSVIIVGPQLKLHECGLPKLMALELFKPFVMKRLVENDYAQNIKSAKRMVERQR
PEVWDVLEEAISEHPVMLNRAPTLHRLGIQAFEPKLVEGKAIQLHPLACEAFNADFDGDQ
MAVHLPLSAEAQAEARVLMLASNNILSPASGKPLAMPRLDMVTGLYYLTMDKAEGEIGGE
GRYTEATENGPATGVYSSYAEAIMARDRGVLGLQAPIKVRISHLRPPAEIEAEQFPDGWQ
KGQAWMAQTTLGRIMFNDLLPWNYPYLEGVMVRKGGAKNSVLLGDVINDLAAKYPMITVA
QVLDKMKDAGFYWATRSGVTITMDDVLVLPNKTEVLESYEKEAQRIERKYWEQGALTERE
RYDRLVELWKDATDTVGKAVEDLYPDDNPIPMIVKSGAAGNMRQIWTLAGMKGMVVNSKG
DYITRPIKTSFREGLSVLEYFNNSHGSRKGLADTALRTADSGYLTRRLVDVAQDVIVREE
DCGTRQGVRVPLGEWAGDKLVPHELWETSASGRVVASDVKAEDGTVVAEAGSDLTEELTE
KILAAGIADIKVRSVLTCQTPAGVCAKCYGKSMASGQLVDIGEAVGIVAAQSIGEPGTQL
TMRTFHQGGVGGDITGGLPRVQELFEARNPKNRAPIASVDGTVSLSDEGNFWTLTITPDD
GSDNVVYEKLSKRQGLAQVRRPMESNPDAMIERSLRDGDHVTTGERLMRGAADPHDVLEV
LGRRGVEKHLIDEVQAVYRTQGVAIHDKHIEIIIRQMLRRGTVIDSGSTDYLPGVLVDLS
EAKQVNAAQVAEGGEPAQLRSEIMGITKASLATESWLSAASFQETTRVLTDAAINKRSDQ
LIGLKENVIIGKLIPAGTGISRYRNISVKPTEAARNAAYSIPTYGDSIYGDDGFGEFTGA
SVPLDEDFTF
NT seq
3993 nt
NT seq
+upstream
nt +downstream
nt
gtgtttgacgtaaatctcttcgacgagctccgcatcggtctggccactgccgatgacatt
cgccgttggtccaagggcgaggttaaaaagcctgagaccatcaactaccgcaccctgaag
ccggaaaaggacggcctgttctgcgagcgcatcttcggcccaacccgtgactgggagtgc
gcttgcggtaagtacaagcgcgttcgctacaagggcatcatctgtgagcgctgcggcgtc
gaggtcaccaagtccaaggttcgccgtgagcgcatgggccacatcgagctggctgctccg
gtaacacacatctggtacttcaagggcgttccttcccgcctgggttaccttctggacctt
gctccgaaggacctggagcgcatcatctacttcgcagccaacatcatcacctctgttgat
gaagaggctcgccacaacgaccagtccaccctggaagcagagatgcttctggagaagaag
gacgtcgaggaagacaccgagtctgagatcgcagagcgcgctgccaagctcgagcaggat
ctggctgagctggaggctgctggcgcaaaggctgaagcacgccgcaaggtccagaacgct
gctgacaaggagatgcagcacatccgtgagcgtggcgagcgcgaggtcgcacgcctggat
gaaatctggaacaccttcctgaagctggctccgaagcagatgatcatcgatgagaccatc
tacgaagagctcgttgaccgctacgaggattacttcaccggcggcatgggtgctgaggct
atccagacccttatccgcaacttcgacctcgaggctgaggccgaagagctgcgcgaagtc
atcaacaatggcaagggccagaagaagatgcgcgcgctgaagcgtctgaaggtcgtagca
gccttcctgcgctccggcaacgacccggcaggcatggtcctggatgcgatcccggttatc
ccgccggagctgcgcccgatggttcagctcgacggtggccgttttgccacctccgacctg
aacgacctgtaccgccgcgttatcaaccgcaacaaccgcctgaagcgcatgattgatctc
ggcgctcctgagatcatcgttaacaacgagaagcgcatgctgcaggaatctgttgacgcg
ctcttcgacaacggccgtcgcggccgcccggtcaccggacctggcaaccgtccgctgaag
tctctgtctgacttgctcaagggcaagcagggccgtttccgtcagaacctgctgggtaag
cgtgttgactactccggccgttccgttattatcgtcggcccgcagctcaagctgcatgag
tgtggtctgccgaagctgatggctctcgagctgttcaagccattcgtcatgaagcgcttg
gtcgaaaacgactatgcacagaacatcaagtctgcaaagcgcatggttgagcgccagcgt
ccagaggtttgggacgttctggaagaggctatttccgagcacccggttatgctcaaccgt
gcacctacgctgcaccgtctgggtatccaggccttcgagccgaagctggtcgagggtaag
gcaattcagctgcacccgctggcttgcgaggcgttcaacgctgacttcgacggtgaccag
atggcagttcacctgccgctgtccgcagaggcacaggctgaggctcgtgtcctcatgctc
gcttccaacaacattctttccccggcatccggtaagccgctggctatgccgcgtctggat
atggtcaccggtctttactacctgaccatggacaaggcagagggcgagatcggcggcgag
ggccgctacaccgaggcgaccgaaaacggccctgcaactggcgtttactcctcctacgct
gaggccatcatggctcgcgaccgcggcgtcctgggcctgcaggcaccaatcaaggtccgc
atctcccacctgcgtccaccggctgagatcgaggctgagcagttccctgatggttggcag
aagggccaggcttggatggcgcagaccacccttggccgcatcatgttcaacgacttgctg
ccgtggaactacccgtacctcgagggcgtcatggtccgtaagggcggcgccaagaactcc
gtactgctcggtgacgtcattaacgacctcgctgctaagtacccgatgatcaccgttgcc
caggttctggacaagatgaaggatgccggtttctactgggcaacccgttctggcgtgacc
atcaccatggacgacgttctggtccttccgaacaagaccgaggttctcgagtcttacgag
aaggaagcacagcgcattgagcgcaagtactgggagcagggtgcgctgaccgagcgtgag
cgttacgaccgcctggttgagctctggaaggacgctaccgacaccgttggtaaggcagtc
gaggatctctacccggatgacaacccgattccgatgatcgttaagtctggtgcagcgggt
aacatgcgtcagatctggaccctggccggcatgaagggcatggtcgtgaactccaagggt
gactacatcacccgtccgatcaagacctccttccgtgagggtctgtcggtcttggagtac
ttcaacaactcgcacggttcccgtaagggcctggccgataccgcactgcgtaccgcggac
tccggctacctcacccgtcgtctcgtcgacgtggcacaggacgtcatcgtccgcgaagaa
gactgtggcacccgccagggcgtccgcgttccgctgggcgagtgggctggcgacaagttg
gttccacacgagctgtgggagacttccgcatccggccgcgtcgtcgcgtccgatgtgaag
gctgaagatggcactgtcgttgctgaagcaggttctgacctgaccgaggaactgaccgag
aagatcttggctgccggcatcgccgacatcaaggttcgctccgtccttacctgccagacg
ccagccggcgtttgtgcgaagtgctacggcaagtccatggcctccggccagctcgtcgac
atcggcgaggcggtcggcatcgtggctgcacagtccattggtgagccgggtacccagctg
accatgcgtacgttccaccagggtggtgtcggtggcgacattaccggcggtctgccacgt
gttcaggagctgttcgaggctcgtaacccgaagaaccgcgcgccgatcgcatccgttgac
ggcaccgtgtccctgtccgatgagggcaacttctggaccctgaccatcactccggatgac
ggttccgacaacgtcgtctacgagaagctgtcgaagcgccagggcctggcacaggtccgc
cgcccgatggagtccaacccggacgcaatgatcgagcgttccctgcgcgacggtgaccac
gtcaccaccggcgagcgcctgatgcgtggtgcggctgatccgcacgacgtcctcgaggtc
ctcggtcgccgcggcgtcgagaagcacctcatcgacgaggtgcaggccgtttaccgtacc
cagggtgttgccatccacgacaagcacatcgagatcatcatccgccagatgctgcgtcgc
ggtaccgtcattgactccggctccaccgactacctgccgggcgttctggttgacctctct
gaggccaagcaggtcaacgccgcacaggttgccgagggcggcgagccagctcagctgcgc
tccgagatcatgggtatcaccaaggcatcgctggctaccgagtcctggctgtccgcggcc
tccttccaggagaccacgcgcgtgcttaccgacgccgctattaacaagcgctccgatcag
ctcattggcctgaaggagaacgtcatcatcggtaagctcatcccggctggtaccggtatc
tcgcgttaccgcaacatctccgttaagccgaccgaggccgcacgcaacgctgcgtactcg
atcccgacttacggcgattccatctacggcgacgatggattcggtgagttcaccggcgca
tccgtcccgctggatgaggacttcacgttctaa
DBGET
integrated database retrieval system
