Corynebacterium simulans: WM42_2070
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Entry
WM42_2070 CDS
T04316
Name
(GenBank) ribonuclease, Rne/Rng family domain protein
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
csp
Corynebacterium simulans
Pathway
csp03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
csp00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
WM42_2070
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
csp03019
]
WM42_2070
03009 Ribosome biogenesis [BR:
csp03009
]
WM42_2070
Enzymes [BR:
csp01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
WM42_2070
Messenger RNA biogenesis [BR:
csp03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
WM42_2070
Ribosome biogenesis [BR:
csp03009
]
Prokaryotic type
rRNA processing factors
WM42_2070
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNase_E_G
IF2_N
S1
DnaJ_CXXCXGXG
TcdA_TcdB
Motif
Other DBs
NCBI-ProteinID:
AMO89770
LinkDB
All DBs
Position
2142918..2146091
Genome browser
AA seq
1057 aa
AA seq
DB search
MATKKTTKTAKNTKTENSYAAAAAFAAKIDREAFAEKTRLYTVAKQLGLSSKELVVEYAE
LGLKKAAQSSLTREEVGQVLDAIIAKAGDGEAQENKQENKKAKKKKAAAEPAEVKDEQDD
AKLRDRVRKNVANEISQIEEKIEAELAETAEAVEDTAQPEEAEHADTGTVDVEKLHEALV
EAGDEFDEDEYAPVVTPMPQDEPEVYDFAPIFMAPKLEKPQPRETEETSEEARSGGRRRG
SRGTSRGRGAQEHEHETETIEEPKAIKGSTRIEAQRRRRAELREKGRERQHIVSQAEFLA
RRESVERTMVVRDKERADGAGIITQVGVLEDDLLVEHFVTTEAQASLIGNIYLGRVQNVL
PSMEAAFIDIGQGRNGVLYAGEVDWRSAGLGGRGRKIENALKSGDQILVQVAKDPIGHKG
ARLTTQISLAGRYLVYVPGGRSAGISRKLPVPERKRLKSILERVVPGDGGAIIRTAAENV
SEEAISTDVNRLHDLWEDITRRAEHEKSTKGAKPVTMYEEPDLLVKVVRDLFNEDFTKLI
VDGKRSFNTVSAYVESMAPDLADRVEKYDARSNGGEDAFVTYRIDEQLHKALSRKVWLPS
GGTLVIDRTEAMTVIDVNTGKFTGSGGNLEETVTRNNLEAAEEIVRQMRLRDLGGMIVVD
FIDMVLPENQELVLRRLKEALGRDRTRHQVSEVTSLGLVQMTRKRLGTGLVETFSTECET
CHGRGIIIHEYPVEEEQDTHGSHEHKGRRQRRERRHPEHDPQQHPAAVAMHRHEDEQDQE
QQGEKKTSIEELVAGIVVGEEEQDEQKGNKKRRNRRSRRVQREERKPQDAGTSAEDIASI
GYAAAENAAELDDVAEFSSYVADEEEQPRHDKRKSGRGRRRSVRSNAPKQQESDKQQTYE
EAVAEFEASPRRKRRTRGNSRSDHRPQPQDFLAPAEKEAPAEEKVERKPKAALKRVRGRR
RVVRQSAAKPKDAPVVEPEAEEAGEPAATETKVIRRGRKRAVRKAVARKSAQPAAENTQE
NPAKQSENRQAEWEKGRASGKGGSGRGRRRVARRSAK
NT seq
3174 nt
NT seq
+upstream
nt +downstream
nt
atggcgactaagaagactacgaagactgcaaagaatacgaaaactgaaaactcatatgct
gctgcagcagctttcgccgcaaagattgaccgcgaagcttttgcagaaaagacccgcctg
tatacggtggcaaagcagctggggcttagctccaaagagctcgttgttgaatacgccgag
ctgggcctgaaaaaggccgcgcaatcttccctcacgcgggaagaagtaggccaagtcctc
gatgccatcatcgccaaggcaggcgatggcgaggctcaagaaaacaagcaagaaaacaag
aaggctaaaaagaagaaggctgccgccgagcctgctgaggtcaaagacgagcaggacgat
gccaagctgcgcgaccgcgtgcgcaagaacgtcgccaacgagatttcccagattgaggaa
aagatcgaggccgagctcgccgaaaccgctgaggccgtggaagacaccgcgcagcctgaa
gaagctgagcatgcggacacgggcaccgtcgacgtcgagaagctgcatgaggcgctagtt
gaagccggcgatgaattcgacgaagacgagtatgcgcccgtcgttacgccgatgccgcag
gacgagccagaggtctacgacttcgctcctatcttcatggcgccgaagctggaaaagccg
cagccgcgtgagacggaggagacctccgaggaagctcgcagcggtggtcgccgacgcggt
agccgtggtacgtcccgtggccgtggggcacaggagcatgagcacgagaccgagaccatc
gaggagcccaaagcaatcaagggttccactcgcatcgaagcgcagcgccgtcgtcgtgcc
gagctgcgtgagaagggccgagagcgtcagcacatcgtctcccaggcggaattcctggcg
cgtcgggaatccgtcgagcgcaccatggtcgtgcgcgacaaggagcgcgccgatggcgcc
ggcatcatcacgcaggttggcgtcctcgaagacgatctccttgtagagcacttcgtcacc
actgaggcccaggcctcgctcatcggcaatatctacctgggccgtgtgcaaaacgtcctg
ccttcgatggaggctgccttcatcgacatcgggcagggccgcaacggcgtgctttatgcc
ggtgaagtggattggcgttctgctggcctgggcggccgcggacgcaagatcgaaaatgcg
ctcaagtccggtgaccagattctggtccaggtggctaaggacccaatcggtcacaagggc
gcgcgtctgaccacccaaatttccctggccggccgttacctggtctatgtcccaggtggc
cgcagcgcgggtatttcccgcaagctgccagttccggagcgcaagcgcttgaaatccatt
ttggagcgcgttgtgcctggcgacggcggcgcaatcatccgcaccgcagccgagaacgtc
tccgaagaggccatttccaccgacgtcaaccgcctccatgacctgtgggaggacatcact
cgccgcgctgagcacgagaagtccaccaagggtgccaagccagtgaccatgtatgaagag
ccggatcttttggttaaggtcgtccgagaccttttcaacgaggacttcaccaagctcatc
gttgacggtaagcgttccttcaacaccgtcagcgcctatgtcgagtccatggcgcccgat
ctcgctgaccgcgtggagaagtacgacgcacgcagcaacggcggggaagacgcctttgtt
acctaccgcatcgatgagcagctgcataaggcgctcagccgtaaggtatggctgccttcc
ggcggcactctggtcattgaccgcactgaggctatgaccgtgattgacgtcaacaccggc
aagttcaccggttccggcggcaacctggaggagacggtcacccgtaacaatcttgaggct
gccgaggaaatcgtgcgccagatgcgtctgcgtgatttgggcggcatgattgtcgtggac
ttcatcgacatggttctgccggagaaccaggagctggttctgcgccgcctcaaggaggcc
ttgggtcgtgaccgcacgcgccaccaggtttctgaggtcacgtcgttgggtctggtacag
atgacccgtaagcgcctgggcaccggcttggtggagactttctccaccgagtgcgagacc
tgccatggccgcggcatcatcatccacgagtacccagtggaagaagagcaggatactcac
ggcagtcacgagcacaagggacgccgccagcgtcgcgaacgccgtcaccccgaacatgat
ccgcagcagcatccggctgccgttgccatgcaccgccacgaggatgagcaggaccaagag
caacagggggaaaagaagacctccatcgaggaactcgtagctggcatcgtcgtgggcgag
gaggagcaggacgagcagaagggcaataagaagcgccgtaaccgtcgtagtcgccgcgtc
cagcgtgaggaaaggaagcctcaggacgctggtacttctgcagaagacatcgcaagcatc
ggttatgctgctgcggaaaacgccgcagagcttgacgacgtcgcagagttcagctcgtac
gttgccgacgaagaagagcagccacgccatgataaacgcaagagcggacgcggccgtcgt
cgtagcgtgcgttcgaatgctccgaagcagcaggaaagcgataagcagcagacctacgag
gaagccgttgcagagttcgaggcttcgccgcgtcgtaagcgccgcacccgtggcaactcg
cgttccgaccaccgcccgcagccgcaggacttcctggctccggctgaaaaggaagcgccc
gccgaggaaaaggtggagcgcaagccgaaggctgcgctaaagcgagtgcgtggtcgtcgc
cgcgttgttcgccagagtgctgccaaaccaaaggatgcccccgtggtagagcccgaggca
gaagaagcaggagagcctgcagctaccgaaaccaaggtcattcgccgtggccgcaagcgg
gccgtccgcaaggcggtggctcgtaagtccgcgcagccagcagcagaaaacactcaggaa
aatccggctaagcagagcgaaaatcgccaggctgagtgggaaaaggggcgtgcttctggc
aagggcggcagtgggcgcggacggcgtcgcgtagcacggcgcagcgcaaagtag
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