Campylobacter sputorum: CSF_0459
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Entry
CSF_0459 CDS
T04992
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase, beta subunit
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
cspf
Campylobacter sputorum
Pathway
cspf03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
cspf00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
CSF_0459 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cspf03021
]
CSF_0459 (rpoB)
03400 DNA repair and recombination proteins [BR:
cspf03400
]
CSF_0459 (rpoB)
Enzymes [BR:
cspf01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
CSF_0459 (rpoB)
Transcription machinery [BR:
cspf03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
CSF_0459 (rpoB)
DNA repair and recombination proteins [BR:
cspf03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
CSF_0459 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_2
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_45
RNA_pol_Rpb2_1
Motif
Other DBs
NCBI-ProteinID:
ASM36365
LinkDB
All DBs
Position
456578..460717
Genome browser
AA seq
1379 aa
AA seq
DB search
MLNSLRSGNRLRVNYSDIASEIDVPNLLKLQKTSFSYFLDLNAKTAGSGLEKVFKSIFPI
HDPQNRLTLEYVGSELGKPKYTVKECIQRGLTYCVNLKMKIRLILHEKDEKTGEKIGIKD
IKEQDIYIHDIPLMTDRISFIINGVERVVVNQLHRSPGVIFKEEESPTVVNKLIYTAQII
PDRGSWLYFEYDAKDVLYVRINKRRKVPITILFRALGYTKHDIIKLFYPIKTIYIKNNKF
LTDFDPNDYLNRVEYDIKDEKGNVVHSAGKRLTKKKAEKMLEDGLKMVEYPADILIDRYL
SSPIIDSQSGEVIYDILSQLDENKLAKILETQTSIQIANDRASGVDNSIINSFIQDAETL
KLLKQTEGIEDENDLSAIRIYKVMRPGEPVVKEAAKAFMHDLFFNPERYDLTKVGRMKMN
HKLGLDAPEYITVLTSEDIIKTAKYLIKVKNGQGYIDDRDHLGNRRIRSIGELLANEIHL
GFVKMQKAIRDKFTAISGNIEEIMPYDLINPKTISTTLLEFFTSGQLSQFMDQTNPLSEV
THKRRLSALGEGGLVKERAGFEVRDVHPTHYGRICPIETPEGQNIGLINTLSTYAKVNDL
GFVEAPYRKVVDGKVTNDIVYLTATQEEGLVIAPASAKLDDKGNIVDEILEVRKDGETIL
AKREEVSLIDLCSGMIAGVAASLIPFLEHDDANRALMGSNMQRQAVPLLKTTAPLVGTGM
EAIIARDSWESIKAKRSGIVEKVDSKNIFILGEDEDGPYIDHYSLEKNLRTNQNTTFGEY
PIVKKGEFVEANQIIADGPSMEKGELALGKNALIAFMPWNGYNYEDAVVMSEGMIRKDAF
TSVHIYEKEIEARELKDGVEEITKDIPNVKEEDLIHLDESGIVKIGTQVTPGMILVGKVS
PKGEVKPTPEERLLRAIFGEKAGHVVNKSLYAGASMEGVVVDVKIFTKKGYEKDNRTLKA
YEDEKSVLEKEHHDRLLMLDREEMLKVTSLLSKKPLNQDQVIGDIEYKKGSFVPVDVLES
MNRFTLNSFVKSFAKNIQKQYDDLKNYFQNEKKKFKEDHDEKLEILEKDDILPSGVVKLV
KVYIATKRKLKVGDKMAGRHGNKGIVSNIVPEVDMPYLPNGRPVDIVLNPLGVPSRMNIG
QILECHLGLVGWKLGEQIDKILEEKTGEWLKDLRKRMIEIASLSKLADAKKLLKDMSDED
LLKYARDWSKGVKFATHIFDGVNVDDFAKLFEMAGIDSDGKTILYDGRTGSKINERVHVG
CMYYLKLHHLVDEKVHARSTGPYSLVTQQPVGGKALFGGQRFGEMEVWALEAYGAAYTLR
EMLTIKSDDVDGRLEAYKAITRGENVPVTGIPETFFVLTNELKSLALDVEIFDEVDEDE
NT seq
4140 nt
NT seq
+upstream
nt +downstream
nt
atgttaaacagcttacgctctggaaatcgtcttagagttaattattctgatatagctagt
gagattgatgttccaaatttattaaaattacaaaaaacaagttttagttatttcttagat
ttaaatgcaaaaactgctggtagcggtcttgaaaaagtttttaaatcgatatttccaatt
cacgatccacaaaatagactcacattagagtatgttggtagtgagcttggcaaaccaaaa
tatacagttaaagagtgcattcaaagaggtcttacatattgtgtaaatctcaaaatgaaa
attagacttatattacacgaaaaagatgaaaaaaccggtgagaaaatcggtataaaagat
ataaaagaacaagatatttatatccacgatattcctcttatgacagatagaatatcattt
ataataaatggcgttgaaagggttgttgtaaatcaacttcatagaagcccaggcgttatt
tttaaagaagaagaaagtccaactgttgtaaataaacttatttatactgcacaaattata
ccagatagaggcagttggttatattttgaatatgatgcaaaagatgtattatatgttagg
ataaataaaagaagaaaagttccaattactatactttttagggctttaggatacacaaaa
catgatattataaaacttttttatcctataaaaacaatttatattaaaaacaataaattt
ctaacagattttgatccaaatgattatttaaatagagttgaatacgatataaaagatgaa
aaaggtaatgttgttcatagtgctggtaagcgtcttacaaagaaaaaagctgaaaaaatg
cttgaagatggtttaaagatggtagaatatccagctgatattttgatagatagatatctt
tcatctcctattattgatagtcagagtggagaagttatatatgatatactttctcaactt
gatgaaaataaattagccaaaattcttgaaacacaaacaagtattcaaatagcaaatgat
agagcaagtggagttgataactctataattaattccttcattcaagatgctgagactctt
aagttattaaagcaaacagaaggtattgaagatgaaaatgacctttctgctataagaatc
tataaagttatgaggccaggagagcctgttgtaaaagaagctgcaaaagcttttatgcat
gatcttttctttaatcctgaaagatatgacctaacaaaagtaggtcgaatgaaaatgaat
cataagcttggattggatgcacctgaatatatcacagttttaacaagtgaagatatcata
aaaactgcaaaatatcttataaaagttaaaaatggtcaaggttacatagacgatagagat
cacttaggaaatagacgaattagatctattggagagcttttggcaaatgagattcatcta
ggttttgttaaaatgcaaaaagctataagagataaatttacggcaatcagtggcaatata
gaagaaattatgccttatgatttaattaatccaaaaaccataagcacaactttgcttgag
ttttttacaagcggacagcttagtcagtttatggatcaaacaaacccacttagtgaagtt
acacacaaaagaagactttctgcacttggtgagggcggtttggtaaaagaaagagccgga
tttgaagttagagatgttcatccaactcattatggcagaatttgtcctatcgaaactcca
gaaggtcaaaatatcggtcttataaatacactttctacttatgcaaaagtaaatgacctt
ggttttgttgaagcaccttatagaaaagttgtagatggaaaagtcactaatgatatagtt
tatcttactgcaactcaagaagaaggacttgttatagctcctgcatcagcaaaacttgat
gataaaggaaatatcgtagatgaaattttggaagttagaaaagatggagaaaccattctt
gctaaaagagaagaagtaagtttaatagacctttgttctggaatgattgctggtgtagct
gcttcgcttattccattcttagaacatgatgatgctaaccgtgcacttatgggttcaaac
atgcagcgtcaagctgttcctctactaaaaactacggctcctcttgttggaactggaatg
gaagcaattattgcaagagattcttgggagtctataaaagctaagcgttctggtatagta
gaaaaagttgatagtaaaaatatatttattttaggcgaagatgaagatggcccttacatt
gatcattattctttagaaaaaaatttaagaactaaccaaaatacaacttttggagaatat
cctatagtaaaaaaaggtgagtttgttgaagcaaatcaaataattgctgatggtcctagt
atggaaaaaggtgagcttgctttaggaaaaaatgcacttatagcttttatgccttggaat
ggatataactatgaagatgccgttgttatgagcgaaggtatgattagaaaagatgcattt
acgagtgttcatatttatgaaaaagagatagaagctagagaactaaaagatggcgttgaa
gagataacaaaagatataccaaatgtaaaagaagaggatttaattcatcttgatgaaagc
ggtattgtaaaaataggaactcaagtaactcctggtatgattttagttggtaaagttagt
ccaaaaggagaagttaaaccaactcctgaagagagattattaagagctatatttggcgaa
aaagccggacatgttgttaataaatcgctttatgctggtgcttctatggaaggcgttgta
gtagatgttaagatatttactaaaaaaggttatgaaaaagacaatagaactttaaaagca
tatgaagatgaaaaatctgtattggaaaaagagcaccatgacaggcttttgatgcttgat
agagaagagatgttaaaagttacaagtttgctttctaaaaaacctttaaatcaagatcaa
gttattggagatattgagtataaaaaaggctcttttgttcctgtagatgttttagaatct
atgaatagatttactcttaattcttttgtaaaaagctttgctaaaaatatacaaaagcag
tacgatgatttaaaaaattattttcaaaatgagaaaaagaaatttaaagaagatcatgac
gaaaagcttgaaattttagaaaaagatgatattttgccaagcggagttgttaagcttgta
aaagtttatattgctacaaaaagaaagcttaaagttggtgataaaatggcaggacgccac
ggaaataaaggtattgtttcaaatatagttccagaagttgatatgccttatcttccaaac
ggcagaccagttgatatagtattaaatccgcttggtgttccaagtcgtatgaatataggt
caaattttagaatgccatttaggcttggttggatggaaacttggtgagcaaatagataaa
attttagaagaaaaaacaggtgagtggctaaaagacttaagaaaaagaatgattgaaatt
gcatctttatcaaaattggcagatgctaaaaaacttctaaaagatatgagcgatgaagat
cttcttaaatatgcaagagattggtcaaaaggtgttaaatttgcaactcatatatttgat
ggcgtaaatgtagatgattttgcaaaactttttgaaatggctggtattgattctgatggt
aagactatactttatgatggaagaaccggaagtaaaataaacgaaagagttcatgtaggt
tgtatgtattatcttaaacttcaccatcttgttgatgaaaaagttcacgcaagaagcact
ggtccatactctcttgttactcaacaaccagttggcggtaaagcattatttggtggacaa
agatttggagagatggaagtttgggcattagaggcttatggtgctgcttatactctaaga
gaaatgctaactataaaatctgatgatgttgatggaagattagaggcttataaggctata
acaagaggagaaaatgtcccagttacaggtatacctgaaacattttttgttttgacaaat
gaacttaagtcattagcacttgatgttgaaatttttgatgaggtagatgaagatgagtga
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integrated database retrieval system
