Cytobacillus spongiae: LS684_03380
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Entry
LS684_03380 CDS
T09119
Symbol
rlmD
Name
(GenBank) 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
KO
K03215
23S rRNA (uracil1939-C5)-methyltransferase [EC:
2.1.1.190
]
Organism
cspg
Cytobacillus spongiae
Brite
KEGG Orthology (KO) [BR:
cspg00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
cspg03009
]
LS684_03380 (rlmD)
Enzymes [BR:
cspg01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.190 23S rRNA (uracil1939-C5)-methyltransferase
LS684_03380 (rlmD)
Ribosome biogenesis [BR:
cspg03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
LS684_03380 (rlmD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA_U5-meth_tr
TRAM
Methyltransf_31
MTS
Methyltransf_25
Methyltransf_15
Cons_hypoth95
Methyltransf_32
Ubie_methyltran
Methyltransf_11
Methyltransf_12
UPF0020
TehB
DUF2023
Sec2p
DUF1828
Motif
Other DBs
NCBI-ProteinID:
UII56538
LinkDB
All DBs
Position
643196..644563
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AA seq
455 aa
AA seq
DB search
MSVEIKPNQTFPLTIKRLGINGEGVGYFKKKVVFVPGALPGEEVVVEATKVNPKFAEGKI
KNIRKKSPHRVEAPCPVYEECGGCQLQHLHYDQQLKEKRDIVIQSLERHTKLPVDQLDIR
ETIGMDDPWNYRNKSQFQVGQKDGKVLAGLYGINSHKLINIQQCAVQHPHTNKATETVKA
ILQDLSIPIYNEKSRKGLVRTIVARVGVQTDELQIVLITTKKELPKKDQIIERITKQLPN
VKSIIQNINGQKTSLIFGEETVTLAGNDFIQETLGDLSFELSARTFFQLNPEQTIKLYNE
VKQAANLTGKEKVVDAYCGVGTIGLWLADQAGEIRGMDVIKESIEDAKKNAARHGFKHTQ
YVTGKAEEIMPKWAKEGWKPDTIVVDPPRTGLDHELLKTILKVKPKKIVYVSCNPSTLAK
DISVLSSKYEVKYLQPVDMFPQTSHVECVALIELK
NT seq
1368 nt
NT seq
+upstream
nt +downstream
nt
atgtcagttgaaataaaaccgaatcaaaccttcccgttaacaatcaagcggctaggaatt
aatggcgaaggagtcggctacttcaaaaagaaggtcgtatttgtaccaggtgctttacct
ggtgaggaagtagtcgtcgaggccacaaaggtcaacccgaaatttgcagagggaaaaatc
aaaaacatacgaaagaaatccccacaccgcgtagaggcaccttgtcctgtctacgaagag
tgcggaggctgtcaactacagcatttacactacgaccagcagcttaaagaaaagcgagac
atcgtcattcaatcgttggaaagacacacgaagctgcctgtagatcagctagatatccgc
gaaacaattggaatggacgatccgtggaactaccggaacaaaagccagttccaggttggt
cagaaggatggaaaggtactagcagggctgtacggcatcaattcacataagcttattaac
attcagcaatgcgccgttcagcatccacacacaaacaaagcaaccgaaacagttaaagcg
attttacaagacttaagcatacctatctataatgagaaatcaagaaaaggattggttcgt
acgatcgtagccagagtaggtgtacaaacagacgagctccaaatagttttaatcacaacg
aaaaaagagctgccgaagaaggatcaaatcatcgagcgaattacgaagcagctaccgaat
gtgaaatcaatcatccaaaatataaacgggcaaaaaacgtcattaattttcggcgaagaa
acggtcacactagcaggaaatgactttatccaggaaacactaggcgacctatcattcgag
ctctcagcgcgaactttcttccagctgaatccggaacaaacaatcaagctctacaacgaa
gtcaaacaagcggcaaacctaacagggaaagaaaaagtcgtcgacgcctactgcggtgtc
ggaacaattggcctatggctcgcagaccaagcaggagaaatccgcggcatggacgtcatt
aaagaatccatcgaagacgccaagaaaaatgcagcgcgccacggcttcaagcatacccaa
tatgtcacaggcaaagccgaagaaataatgcctaaatgggccaaagaaggctggaaaccc
gacacaatcgtcgtcgatcccccaagaaccggactcgaccacgagctactcaaaaccatc
ttaaaagtaaaaccaaagaaaatcgtatatgtttcatgtaacccatccacactggcaaag
gatatctctgtattaagctcaaaatatgaagtgaaatatcttcagcctgtggatatgttt
ccgcagactagtcatgtcgagtgcgtcgcgttgatagagttgaaatag
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