Cytobacillus spongiae: LS684_10995
Help
Entry
LS684_10995 CDS
T09119
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
cspg
Cytobacillus spongiae
Pathway
cspg03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cspg00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LS684_10995
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cspg03019
]
LS684_10995
03009 Ribosome biogenesis [BR:
cspg03009
]
LS684_10995
Enzymes [BR:
cspg01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
LS684_10995
Messenger RNA biogenesis [BR:
cspg03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
LS684_10995
Ribosome biogenesis [BR:
cspg03009
]
Prokaryotic type
rRNA helicases
LS684_10995
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
AAA_19
Cas3-like_C_2
UvrD-helicase
Motif
Other DBs
NCBI-ProteinID:
UII54222
LinkDB
All DBs
Position
complement(2177744..2179111)
Genome browser
AA seq
455 aa
AA seq
DB search
MPNFTALGVSNHMVEKLRENGISVATPIQEQAIPKIVEGKDLIGQAQTGTGKTLAFVLPI
LAKLNPNEEHIQALIVTPTRELAIQITAEINTLLSADRGIDVLAVYGGQDVEKQLKGLKK
KKQIVVGTPGRLLDHLRRKTINLSKLSHLVLDEADQMLHIGFLSEVEDIIHKTPKSRQTL
LFSATMPAEIRQLATKHMKHPEYLQVEKVQGPADTVQQMAIHTTDRGKQGTLVQLVEMHR
PFLSVIFCRTKRRVTKLHGVLKNHGFTCDELHGDLSQAKREQVMKRFRDADIQLLIATDV
AARGLDVEGVTHVYNYDIPLDGESYIHRIGRTGRAGTKGMAITLYTSEDRATLDLIEKEI
NIRIDKKNIGNMNTSEGQKSAPVASTEKNKKPRKKPVAGEKKKKAPRREEGRGQVKKEKS
FTKDKGSTSKPSQKKRTSSSRSVPKSASGARGKRK
NT seq
1368 nt
NT seq
+upstream
nt +downstream
nt
ttgcctaattttacagctttaggtgtttcaaatcacatggtagaaaaattgcgggagaat
ggaatttcggttgctaccccaattcaggaacaagcgataccaaaaatagtagaaggcaag
gatttaatcggacaagctcagacgggtacagggaaaacactagcgtttgtcttaccgatt
ctagcaaagctgaacccaaacgaagaacatattcaagcactaatcgttaccccgacaaga
gaacttgccattcaaattactgccgaaattaacacgttattatcagccgatagggggata
gatgtattagcagtgtacggcgggcaagatgtagaaaaacagctaaagggacttaagaaa
aaaaagcaaatcgtagtagggactcctggaaggctattagatcatctaaggagaaaaacg
attaatttaagtaaactgtcacatctcgttttagatgaagcggatcaaatgcttcatatc
ggttttttaagcgaagtagaggacattattcataagaccccaaagagtagacaaactcta
ctattttcagctaccatgccggcagagattcgtcagttagcaactaagcatatgaagcat
cctgaataccttcaagtagaaaaagtgcaaggcccagcagatacggtccagcaaatggct
atccatacaactgatcgcggaaagcagggaacgttggttcaattagtagaaatgcatcgt
ccatttttatcggttattttttgccgaacgaaacgaagagttactaagttgcatggtgtc
ttaaagaatcatggcttcacatgtgatgaactccatggggacctctcacaagcaaaaagg
gaacaagttatgaagcgattccgcgacgcagatatccaactgttaattgctacggatgtt
gccgcaagaggtctggacgtagaaggggttacacatgtatataattacgatatcccacta
gacggtgaaagctatatccaccgtatcggtcgaacaggaagagctgggacaaaaggaatg
gcgattacattatatacttctgaggaccgtgcaacccttgatttaattgaaaaggaaata
aatattcggatcgataagaaaaacatcggaaatatgaatacatcagagggacaaaaatca
gcacctgtagcttcaaccgaaaagaataagaaacctagaaaaaagcctgttgcaggtgaa
aagaaaaagaaagcaccacgccgtgaagaaggcagaggtcaagtgaaaaaagaaaagagc
tttactaaagataaaggctcaacttccaaaccatcgcaaaagaaacgaacttcttcctca
agaagcgtaccgaaatccgcttcgggagctagaggaaagcgtaaataa
DBGET
integrated database retrieval system
