Cytobacillus spongiae: LS684_12030
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Entry
LS684_12030 CDS
T09119
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
cspg
Cytobacillus spongiae
Pathway
cspg03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cspg00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LS684_12030
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cspg03019
]
LS684_12030
03009 Ribosome biogenesis [BR:
cspg03009
]
LS684_12030
Enzymes [BR:
cspg01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
LS684_12030
Messenger RNA biogenesis [BR:
cspg03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
LS684_12030
Ribosome biogenesis [BR:
cspg03009
]
Prokaryotic type
rRNA helicases
LS684_12030
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_30
AAA_19
AAA_22
Flavi_DEAD
DUF4422
Motif
Other DBs
NCBI-ProteinID:
UII57925
LinkDB
All DBs
Position
complement(2380421..2381827)
Genome browser
AA seq
468 aa
AA seq
DB search
MGFEEPTPIQAQAIPIALTGKDMIGQAQTGTGKTTAFGVPLLEKMDIDGGIQGLVLAPTR
ELAVQVAEELNRIGNVKGIRTLPIYGGQDINRQIRALKNKPQIIAATPGRLMDHMDRKTI
RLNNIKMVVLDEADEMLNMGFIEDIEKILSQVPSERQTLLFSATMPKRIQSLAERFMVEP
ELVKVKAKEMTVKNIEQSYIEVHEKQKFDVLCSLLDIQAPELAIIFGRTKKRVDEVVEGL
IKRGYSAEGIHGDIPQNKRDQVIRRFKDQTIEIMVATDVAARGLDISGVSHVYNFDIPQD
PESYVHRIGRTGRAGKKGLAVTFVTPRETDHLKIIESVTKKKMVKQPIPSFSEVIAGNQQ
ATISKILKVIENEEYGEYKRVAESLLEEMDSVTLLSAAFKLLTKEPDTTPVKLTAVEPLR
SRKPKSDKDRTRRSDRGRGGRRDRTPSGGGNRERSSNRDRNRNRNRNK
NT seq
1407 nt
NT seq
+upstream
nt +downstream
nt
atgggcttcgaggaaccaactcccattcaagcgcaagctattcccatcgcattaactggt
aaggatatgattggtcaagcccaaacaggaacaggaaaaacaacagcatttggtgtacca
ttacttgaaaagatggacatcgatggaggaattcaagggcttgtacttgctccaacacgt
gaactagcggttcaggtagctgaagagcttaaccgaattggaaatgtaaagggaatccgt
acattaccgatctatggtggacaagatattaacagacaaattcgtgcattaaagaataaa
ccacaaattattgcagccactccgggtagacttatggatcatatggatcgtaagacgatt
cgtttgaacaatattaaaatggttgtattagatgaagcagatgaaatgctgaacatgggc
tttattgaagatattgagaagattctaagccaagttcctagcgagcgtcaaacacttctc
ttctcagcaacaatgcctaagcgaattcaatcacttgccgaacggtttatggttgagcct
gagcttgttaaagttaaagcaaaggaaatgacggtaaaaaatatcgagcaaagctatatt
gaagttcacgaaaaacaaaaatttgatgtgctttgtagtttacttgatattcaagcacca
gagcttgcaattattttcggacgcacgaaaaagcgtgtagatgaagtggttgaaggctta
attaaacgtggttattcagctgaaggaattcacggagatatcccgcaaaataaacgtgat
caagttattcgacgctttaaagatcaaacgattgaaattatggttgcaacggatgtagca
gctagaggacttgatattagtggagtttcacatgtttataactttgatattcctcaagat
cctgaaagctacgtacaccgtattggacgtactggccgtgctggaaaaaaaggcttagca
gttacatttgttacacctagagaaacggatcatttaaaaattattgagtcagtcactaaa
aagaaaatggttaaacaaccgattccttcattcagtgaagtaattgcagggaatcagcaa
gcaaccatttctaaaattctgaaagtaatcgaaaacgaagagtatggcgagtataagcgt
gtggctgaatccctactagaagaaatggattctgttacgttgttgtcagctgcgtttaag
ctattaacaaaggaaccagatacgactccagtcaaattaacagctgttgaacctttacgt
tcaagaaagcctaaatctgacaaagatcgcacgagacgttcggatcgcggtcgaggtgga
agaagagatcgcactccaagtggcggcggaaatagagaaagaagttcaaatagagatcgc
aatcgaaatagaaatcgaaataaatga
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