Cytobacillus spongiae: LS684_15240
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Entry
LS684_15240 CDS
T09119
Symbol
recJ
Name
(GenBank) single-stranded-DNA-specific exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
cspg
Cytobacillus spongiae
Pathway
cspg03410
Base excision repair
cspg03430
Mismatch repair
cspg03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
cspg00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
LS684_15240 (recJ)
03430 Mismatch repair
LS684_15240 (recJ)
03440 Homologous recombination
LS684_15240 (recJ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cspg03400
]
LS684_15240 (recJ)
DNA repair and recombination proteins [BR:
cspg03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
LS684_15240 (recJ)
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
LS684_15240 (recJ)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
LS684_15240 (recJ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ssDNA-exonuc_C
RecJ_OB
DHH
DHHA1
Motif
Other DBs
NCBI-ProteinID:
UII55003
LinkDB
All DBs
Position
complement(3000166..3002532)
Genome browser
AA seq
788 aa
AA seq
DB search
MLKSRTRWNVRQSNTETVDKLVAELNITPLVASLLVNRGIDTVEEARYFLFDNQLDFHDP
FLLTGMDHAVARIKEAIEKQEPIMIFGDYDADGVTSTTVMMKTLTDLGANVQFYIPNRFT
EGYGPNEAAFTYAAESGIQLIITVDTGISALHEANVAKDLGVDLIITDHHEPGPMLPEAL
AIIHPKLEGSSYPFKELAGVGVAFKLSHALYGKVPEHLLEIAVIGTIADLVSLTGENRLI
AKRGLKKLRTTNNIGLKALFKQTKVEMDKIDEETIGFLVAPRINAVGRLESADPAVHLLL
TDDPYEAETLAEEIDGLNKERQDIVSKIAEEAIQEVEEKYPASEHPVLVIGKVGWNAGVI
GIVASRLVEKYYRPIIVLSFDEEKNQAKGSARSIAGFDLFKNLSTCRDILPHFGGHPMAA
GMTLKLDDVDELRSRLNDLAKEQLNENDFIPVTDVDGQFALEDIHLSALEELQMLAPYGM
NNPKPRIIINDTHLSTIRKIGSNQTHLKVTLSANGATLDGVGFGLGHLCDHISPFSKLSV
VGELSINEWNNIRKPQLFLHDLTVKEWQLFDYRGMKQLGKFKDMIPKNETIWVIFNKENY
QPLQNLLKEELVLIETIDEARAMIIDHQSVILVDLPSSEDVLKQLVANKKPTRIYTHFYK
EESDFFSTIPTRDHFKWFYAFLAKKSPFDLKRYGDDLAKHKGWSRETIDFMSKVFFELDF
VKISNGIISLDTSASKKDLNASPTYQRKQAQYALENELLYSSFQQLKNWFDQHIQGSVMI
EEEMKEWI
NT seq
2367 nt
NT seq
+upstream
nt +downstream
nt
atgttaaaatcaagaacacgatggaatgttcgacaatcgaatactgagacagtcgataaa
ctcgttgcagaattaaacatcacgcctcttgttgcatcgttacttgtgaatcgcggaata
gataccgttgaagaagcacggtattttttgtttgacaaccaacttgatttccatgatcct
tttttactaactggaatggatcatgcagttgcgcgaattaaagaggcgatcgaaaagcaa
gagcctattatgatttttggagactatgatgcagatggtgtaacaagtaccactgttatg
atgaaaacacttacagacctaggagcgaatgttcaattttatatacctaatcggtttaca
gaaggatatggcccaaatgaagcagccttcacttacgctgcagaaagtggaatacaactg
attattacggttgatacaggtatatctgcattacacgaagcaaacgtagcaaaagatctt
ggggttgacctgatcattacagaccatcatgagccaggtcccatgttgccagaagctttg
gcgatcattcacccaaagcttgaaggtagctcctatccgtttaaagagctcgctggtgta
ggggtagcatttaagctttctcatgcactatatggaaaagtacccgagcatttattggag
attgccgtaattggtaccattgctgacctcgtttcattaactggagaaaaccgattaatt
gctaaacgcggtttgaaaaaattaagaacaacaaacaatatcgggcttaaagctttgttt
aaacaaacaaaggtagagatggacaagatagacgaagaaacaattggtttcttagttgct
ccaagaattaatgcggtgggtcgtttggaaagtgcggatcctgctgttcatttactactg
actgatgacccatatgaagcagagacacttgcagaagagatagatggcctaaacaaagaa
agacaggacatcgtgagtaaaattgccgaggaagctattcaagaggtggaagagaagtat
ccagcttcagagcaccctgtattagtcatcggtaaagttggatggaacgcaggtgtgatt
ggaattgttgcttcaagattggtggaaaaatactacaggccaataattgtacttagcttt
gatgaagaaaaaaatcaagcaaaagggtctgctcgtagtattgctggctttgatctattt
aaaaatctatcaacatgccgtgatatccttcctcatttcggtggacatccaatggcagct
gggatgactctcaaactggatgatgtggacgagctaaggagccgccttaatgatcttgca
aaagagcaactaaacgagaatgacttcattccagtaacggatgtggatggtcaatttgca
ttagaggacattcacttatctgcattagaggaattacaaatgcttgctccgtatggaatg
aataatccaaaaccacgaataataataaatgatactcatttatcaacgattcgaaaaatt
ggttcaaatcaaacacatttgaaagtaacgctttcagcaaatggggctacccttgatgga
gtcggctttggactaggtcatctatgcgatcatatttcgccattttcgaagctgtcggtt
gtgggcgagctctcaattaatgaatggaataacattcggaagccgcaattatttcttcat
gatttaacggtaaaagaatggcagctttttgactatcgcggaatgaaacagctggggaaa
tttaaagatatgattcccaaaaatgaaacgatttgggttatttttaataaagagaattat
caaccattgcaaaatcttcttaaagaagaacttgtattgatagaaacaatagatgaagca
agagcgatgataattgatcatcaatcagtcattcttgttgacttaccttcatcagaagat
gtcttgaaacaattggtggcgaataagaagcctacaagaatttacacacatttttataaa
gaagaaagtgatttcttcagcacgataccaactagagatcactttaaatggttctatgcc
tttttagcaaaaaaatcaccgtttgacctcaaacgatatggcgatgatcttgcgaaacac
aaaggatggtcaagagagacaatcgactttatgtcaaaggtgttttttgaattagatttt
gttaaaataagcaatggaatcatatccttagatacatcagcttcaaagaaggatttaaat
gcttcacccacatatcaaagaaagcaagcacaatatgctcttgagaatgaattgctttac
tcgtcgtttcagcaattaaaaaactggttcgatcagcatattcaagggtctgttatgatt
gaggaggaaatgaaggaatggatttaa
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