Cytobacillus spongiae: LS684_18220
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Entry
LS684_18220 CDS
T09119
Symbol
rnr
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
cspg
Cytobacillus spongiae
Pathway
cspg03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cspg00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LS684_18220 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cspg03019
]
LS684_18220 (rnr)
03016 Transfer RNA biogenesis [BR:
cspg03016
]
LS684_18220 (rnr)
Enzymes [BR:
cspg01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
LS684_18220 (rnr)
Messenger RNA biogenesis [BR:
cspg03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
LS684_18220 (rnr)
Transfer RNA biogenesis [BR:
cspg03016
]
Prokaryotic type
tRNA degradation factors
LS684_18220 (rnr)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
S1CSD-TOTE-2
S1_RRP5
OB_RNR_1st
OB_Dis3
RNase_II_C_S1
MarR_2
Motif
Other DBs
NCBI-ProteinID:
UII55542
LinkDB
All DBs
Position
complement(3595601..3597937)
Genome browser
AA seq
778 aa
AA seq
DB search
MEQNIQQHVDKLLHYMKDEAYKPLTVQELEAAFGIEDSTHFKDFVKALVVMEEKGLVVRT
RSNRYGLPEKMNLIRGKLTGHAKGFAFVIPDEPGMDDIFIPPNETNNAMHGDTVLARVSS
ETSGQRREGTIVRILERGIQKIVGTYIESKNFGFVLPDDKKFAGDIFIPKAASKGAVEGH
KVVVELTVYPEGRKSAEGEVVKILGHKNDPGVDILSIIHKHGLPMAFPDEVINQANETPD
TINESELENRRDLRNETIVTIDGADAKDLDDAVQVEKLDNGNYKLGVHIADVTYYVTEDS
TIDREAAERGTSVYLVDRVIPMIPHRLSNGICSLNPKVDRLTLSCSMEITPEGEVVHHEI
YQSVIKTTERMTYHDVNLILTEKDENLIKRYEPLVPMFELMAELAEILRTKRMNRGAIDF
DFKESKVLVDEEGKPTDVVLRERSVAERLIEEFMLAANETVAEHFHWLDVPFIYRIHEDP
KEDKLRKFFEFITNFGYLVKGTANAVHPRALQEIIEEVQGKPEEMVVSTVMLRSMQQAKY
NPDSLGHFGLSTEFYTHFTSPIRRYPDLIVHRLIRTYLIEGKLDQATREKWSALLPDIAE
HTSKMERRAVEAERETDELKKSEYMEDKVGEEYDGIISSVTNFGIFVELPNTIEGLVHVS
YMTDDYYRYDERHYAMIGERTGNVYRIGDEITVRVVKVNKEERAIDFEIVGMKGTRRREI
SDAPRVFKTGSNEKKPRKSKAKGDRKPMNGSKGTAPGKKRKKDKKHFENAPKAKRKKK
NT seq
2337 nt
NT seq
+upstream
nt +downstream
nt
atggaacaaaacattcagcagcatgtagataagctattacactacatgaaggatgaagca
tataagcctttaactgtacaagagttagaggcggcattcggaattgaagattccacacat
ttcaaagatttcgtaaaagcgcttgttgtgatggaggaaaagggactagttgtacggacg
agaagcaatcgttatggattgccggaaaaaatgaatcttattcgcggaaaactaactgga
catgctaaagggtttgcctttgtgattcctgatgagccggggatggacgatatttttatt
ccgccgaatgaaacgaataatgcgatgcatggagatacggtacttgcacgtgtatcctca
gaaacttcaggccaaagaagagaagggaccattgttcgtattctagaaagaggcattcaa
aaaatcgtcggaacatacatcgaaagcaaaaacttcggatttgtgttaccagacgataaa
aagtttgcaggggatattttcatcccaaaagctgcttctaagggagctgtagaaggccac
aaagtcgtagttgaattaacagtttatcctgaagggcgcaagagtgcggagggagaagtt
gtaaaaatattaggtcataaaaatgatccaggagtcgatattctctcgatcattcataag
catggcctgccgatggcttttccagatgaagtaattaaccaagcgaacgaaacgccagac
acgattaacgaaagtgaattggaaaatagaagagatctccgaaacgagacgattgtcacg
attgatggtgcagatgcaaaggacctagatgacgccgtacaggttgagaagctagacaat
ggaaactataagctgggtgttcatatcgctgatgttacatattacgtaacagaagattca
actatcgaccgtgaagcagctgaacgcgggacaagtgtgtatcttgttgaccgagtgatt
ccaatgattcctcaccgactatcgaatgggatttgttccttgaatccaaaggtggatcgc
ttaaccttatcttgttcgatggaaattacaccagaaggggaagtcgttcatcacgaaatc
taccaaagtgtgataaaaacaactgaacggatgacctatcacgatgttaacttaatttta
accgaaaaggatgagaatctaatcaagcgctatgagccgcttgttccgatgttcgaatta
atggctgagcttgcagaaattctccgtacgaagcgaatgaatcgtggggctatcgacttt
gactttaaagaatccaaagttctagttgatgaagaaggaaagccaacagatgttgtatta
agagaacgatctgtggcggaacgccttattgaagaattcatgcttgcggcaaatgaaacg
gttgctgagcattttcactggttggatgtaccgtttatctaccgtatccatgaggacccg
aaagaggacaagctacgtaaattcttcgagtttattacgaatttcggctacttagtaaaa
gggacagctaatgctgttcacccaagggctcttcaggaaattattgaagaagtacaaggg
aaaccagaagagatggttgtatcaacggttatgctacgctcgatgcagcaggcgaaatac
aatccagatagcttaggacactttgggttgtctactgagttttatactcatttcacttca
ccaattcgtcgttatccagacttaatcgttcatcgcctcatccggacgtatttaattgaa
ggcaagcttgaccaagcaacaagagagaaatggagtgcacttctaccagatatcgctgag
catacgtctaagatggaacgccgagcggttgaagcagaacgtgaaaccgatgagcttaaa
aaatcagaatatatggaggacaaggtcggcgaagagtatgatggaatcattagctctgtt
acaaactttggtatatttgtggagcttccgaatacgatcgaaggacttgttcacgtaagc
tatatgaccgatgattattatcgctatgacgagcgccattacgcgatgatcggcgagcgc
acggggaatgtttatcgcattggggatgagattacagttcgcgtagttaaagtcaataag
gaagagcgagcaattgattttgaaattgtcggtatgaaagggactcgccgccgtgaaatc
tctgatgcaccaagagtgtttaaaacaggtagcaatgaaaagaaaccgagaaaatcaaag
gctaagggtgaccgtaagccaatgaatggctctaaaggaacagcaccagggaagaagcgg
aagaaagacaaaaagcattttgaaaacgcaccaaaagcaaagcgtaagaaaaaatga
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