Cytobacillus spongiae: LS684_21710
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Entry
LS684_21710 CDS
T09119
Name
(GenBank) ribonuclease J
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
cspg
Cytobacillus spongiae
Pathway
cspg03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cspg00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LS684_21710
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cspg03019
]
LS684_21710
Messenger RNA biogenesis [BR:
cspg03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
LS684_21710
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
RNase_J_C
Lactamase_B
Lactamase_B_2
RMMBL
Anti-Pycsar_Apyc1
ODP
Lactamase_B_6
HH_RND_rel
Motif
Other DBs
NCBI-ProteinID:
UII58234
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All DBs
Position
unnamed:complement(244198..245871)
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AA seq
557 aa
AA seq
DB search
MHTNEQALSIFALGGINEIGKNMYVIQHRDDIVIIDCGGKFPDESLLGIDLIIPDVTYLE
KNRDKIRGLIVTHGHEDHIGGIPYLLKKINIPIYATHFTLGLIELKLEEHKLMRESKLVT
VDSQSNLNLGTINVSFFKVSHSIPDCLGIVFHTPEGNVVHTGDFKFDLTPANHQSSDIHK
MARIGDEGVLVLLSESTNAERGGLTPSEKMVGNHMDEAFLKAGGKVFVSTFASNINRVQQ
VVDASIKTNRKLALLGRSMINVVSIAMERGYLTVPEGMLIDAREIDALPPEKVAILCTGS
QGEPMAALGRLSSGRFRDVYVYPGDTVILAASPIPGNEKDVSRILDNLFQLGAHVIYGSG
STTGMHVSGHGYQEDLKLMLTLMKPTYFIPIHGEYRMLHHHRLLAESVGVETGNTFIIKN
GDVVDIESSAARQTRTIPAGDTYVDGLSVGDIGSIVLRDRKQLSEDGMLIIVITLNKSDH
TVISGPDTVSRGFVFVRDSEDLLNEINHLVKKVLDDLSEANIRDWKEMKQAIKKDVGQYV
FKHLKRKPVLLPIIIEV
NT seq
1674 nt
NT seq
+upstream
nt +downstream
nt
ttgcatacaaatgaacaggctttatccatttttgcattaggcggaatcaatgaaatcggc
aaaaacatgtacgtcatccaacaccgtgatgatatcgtcatcattgactgtggaggtaaa
ttcccggatgaaagtctcttgggtatagacttgattattcccgatgttacgtatcttgag
aaaaacagggataaaatacgtggattaatcgtcactcatggacacgaagatcacataggc
ggtataccttatctgctcaaaaaaataaacatacctatttatgctactcatttcaccctg
ggtttaatcgaactcaagctagaagaacataagctgatgagagagtcgaaacttgtaacc
gtcgactcacaatccaacttgaatctcggcacgattaatgtgtcgtttttcaaggtcagt
cacagtatcccggattgtttagggatcgtcttccataccccggaaggaaatgtcgtccat
actggtgacttcaaattcgacttaactccggcaaatcaccaatcctcagatatccacaaa
atggctcggatcggtgatgaaggggtgttggtactgctctctgaaagtacgaatgcggag
cgagggggtctgacaccttctgaaaaaatggtgggaaatcacatggatgaggcctttttg
aaggcaggcggaaaggtcttcgtctcgacattcgcttcgaatatcaatcgtgtccaacag
gtggtcgatgcctccattaaaacaaaccggaagctggcactattgggaaggagcatgata
aatgtcgtttcgattgccatggaaagaggatatttgactgttcctgaagggatgttgatt
gatgcacgtgaaatcgatgctctcccacctgaaaaagtcgccattctttgcacgggcagt
caaggtgaaccgatggccgcccttggtcgactttcaagcggaagattcagagacgtctac
gtttaccctggagacacagtcattcttgctgcctctcccatccctggcaacgaaaaagac
gtatcccgcattttagataacctttttcaactcggtgcacatgtgatctatggcagcggc
agtaccaccggcatgcatgtgtcgggacacggatatcaagaagacttaaaattgatgcta
acgttaatgaaacccacctatttcatccctattcatggagaataccgtatgctgcatcat
caccgtttgctcgctgaatccgtcggggttgaaactgggaataccttcatcatcaaaaac
ggagatgtcgtcgatattgagagttcagcagccaggcaaacccgcaccattccagcaggt
gatacttatgtggacggcctcagtgtcggtgatattggatcaattgttttacgggaccgt
aaacagctttctgaagatgggatgctgatcatcgtcatcaccctgaacaaatcggatcat
acggttatttccggccctgatacagtctcccgaggtttcgtatttgtacgtgactcagag
gatttattaaacgagatcaaccatctcgtgaaaaaagttctcgatgatttatccgaggca
aacatacgtgattggaaagaaatgaagcaggctatcaaaaaagacgttggacagtatgtt
ttcaaacatttgaagcggaagcctgtacttctgccgattattatcgaggtatga
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