Cytobacillus spongiae: LS684_23750
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Entry
LS684_23750 CDS
T09119
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
cspg
Cytobacillus spongiae
Pathway
cspg03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
cspg00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
LS684_23750
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cspg03400
]
LS684_23750
Enzymes [BR:
cspg01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
LS684_23750
DNA repair and recombination proteins [BR:
cspg03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
LS684_23750
SSDB
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Paralog
GFIT
Motif
Pfam:
LigD_Prim-Pol
DNA_ligase_A_M
DNA_ligase_A_C
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
UII58604
LinkDB
All DBs
Position
unnamed:629240..631099
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AA seq
619 aa
AA seq
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MKPMLPTLHEVLPDNGDWLYEVKYDGFRGILSILSHERISLQSRNGKELLPHFPEIDEQI
KSLLKGTNLPVPIVLDGEVTLLRSANSSEFFELQVRGRMRKEEKINDAAARRPVTFLAFD
LLQYMDHTLVDEPYYMRKEKLKELFTLLQMPLEPSPDLPFSLQMVPCYEDKGELWKLVEN
EEGEGVVAKRKMSKWEKGKRSTNWIKRKNWKKCKCFITSLDENNDYFHIGVYEKDAIRPI
GSFHFGLSPEEKKTLKASIKMNFTSKENSMYFIDPAITVEIVYLNWYDDQLREPHFHQFL
FSTSPEACTFEQFMMDEGSLPNDVEITHSNKKLFKKVSMTKLDYIRYLRKMSVVFLPFLK
DRPLTCIRFPHGIFGEFFYQKNTPDYAPSFVETFQLEGIHYTLCNNLKTLIWLGNQLALE
FHIPSQKAEEEYVNEVVFDLDPPSRDQFGLAVKAAGMMKGLFDRLGLHSFVKTSGNKGLQ
VYIPLPIGYTWKETGLFTEFIARYLVTNNPDDFTIERLKKNRGGKLYVDYIQHGEGKTII
APYSLRGNEEALVATPLWWYEVNDDLHPEQFTIEVVMRRFREMGCPFTGYNTVKELQPFE
QVIHFLKNSDHEKEGLPKE
NT seq
1860 nt
NT seq
+upstream
nt +downstream
nt
atgaaacctatgcttcctactctacacgaagtacttcctgacaatggggattggctttat
gaagtgaaatatgatggatttcgagggattctttccattctttctcatgagcgtataagc
cttcaaagtcgcaacggcaaggaattgcttccacactttccggaaattgacgaacagatc
aaatctttactgaaaggaacgaacctccctgtccctatcgtacttgatggtgaggttact
ttattacgttcagccaacagcagtgaattttttgaattgcaagtaaggggaagaatgcgt
aaagaagagaaaatcaatgatgcagcagcacgaagaccagttacgttcctcgcctttgat
ttactccaatacatggatcatacgttggtggacgagccttactatatgagaaaagaaaag
ctaaaagaattattcacccttcttcaaatgcctctggaaccatcccctgatcttccattt
tccctgcagatggttccgtgttacgaagataagggggaactatggaaattagtagagaat
gaagagggtgaaggtgttgtcgcgaagcgcaagatgagtaagtgggaaaaaggaaaacga
agtacgaattggataaaaagaaaaaattggaaaaaatgcaagtgttttatcacttctctt
gatgaaaataatgattactttcatattggggtatatgaaaaagatgccatacgtcctatt
ggttcatttcactttgggctttccccagaagaaaaaaaaacgttgaaagcatcaatcaaa
atgaattttacaagcaaagaaaactccatgtatttcattgatccagcgatcactgtggaa
atagtgtatctaaattggtatgatgatcaactccgtgaacctcattttcaccaatttctg
ttttccacttcccctgaagcctgcacttttgagcaattcatgatggatgaagggtccctt
cccaatgatgtagaaatcactcattcaaacaaaaaattgtttaaaaaagtgtcgatgacc
aagcttgactatattcgttatcttcgcaaaatgtcagtggttttcctgccatttttaaag
gatcgccccttaacgtgtattcgttttccccacgggatatttggtgagttcttttaccaa
aaaaacacacctgattatgctccttcatttgttgagacgtttcaattggaaggaattcat
tataccctatgcaacaatcttaaaaccctcatttggcttggaaatcaattggcgttagaa
tttcacattccctcgcaaaaagcggaagaggaatacgtcaatgaagtagtcttcgacctt
gatccaccaagcagagatcaatttggtcttgctgttaaagctgccggcatgatgaaagga
ctattcgaccggttgggcctgcacagttttgtcaaaacctcagggaacaaagggcttcag
gtatatatccctcttccaatcggctatacatggaaggaaacgggcttgttcactgaattt
atagctcgttaccttgttaccaataaccctgatgactttacaatcgaacgattaaagaag
aatcggggaggaaagctgtacgtggactatattcagcacggagaaggcaagaccatcatt
gctccttattctttaagaggaaatgaggaggctttagttgccacacctctttggtggtac
gaagtgaatgacgaccttcatccagaacagttcaccatcgaagtagtgatgcgaaggttc
agggaaatgggttgtccatttacgggttacaatacagtgaaagagcttcagccttttgaa
caagtgattcactttctaaagaactcagaccatgaaaaagagggcctcccaaaagagtaa
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