Corynebacterium sphenisci: CSPHI_05730
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Entry
CSPHI_05730 CDS
T05122
Name
(GenBank) ATP-dependent helicase
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
csph
Corynebacterium sphenisci
Brite
KEGG Orthology (KO) [BR:
csph00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
csph03019
]
CSPHI_05730
Enzymes [BR:
csph01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
CSPHI_05730
Messenger RNA biogenesis [BR:
csph03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
CSPHI_05730
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
HA2_C
Helicase_C
AAA_22
DEAD
AAA_19
nSTAND3
ABC_tran
AAA_16
NACHT
HA2_N
PhoH
TsaE
T2SSE
Zeta_toxin
Motif
Other DBs
NCBI-ProteinID:
APT90624
UniProt:
A0A1L7CXN2
LinkDB
All DBs
Position
complement(1211764..1215738)
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AA seq
1324 aa
AA seq
DB search
MAVDKRALHERLDGVTIAEARTFRRRIKRAGTPQALSAIGADIELARERLAERATGIPEI
RYPAELPVSGRRDDIAEAIENHQVVVIAGETGSGKTTQIPKILLELGRGVRGRIGHTQPR
RLAARTVAERIAEELGEDLGEHVGYAIRFDDRVGPRTAVKLMTDGILLAEIQRDRMLLDY
DTIIIDEAHERSLNIDFLLGYLRRLLPKRPDLKLVITSATIDPERFARHFADAAGEPAPV
IEVSGRTWPVEIRYRPLQQEYTAKNGETRVRDLDPVDGVIAACEELFAAGEGDILCFFAG
ERDIREAAEAIEGRRWRGVEVLPLYGRLSNAEQHRVFRPHAGRRIVLATNIAETSLTVPG
IRYVVDLGDARISRYSTRTKVQRLPIEPVSRASANQRSGRCGRVAEGIAIRLYSEEDFLS
RPEFTDPEILRTNLASVILQMASLGLGDIAKFPFVEAPDGKSIRDGVNLLDELGAIEPGT
RDAPEGPTLTRIGRELARLPVDPRLARMLVEARDNGVLPAVTVIVAALSLQDVRERPAEK
RAQADQAHARFQDRESDFLTYLALWEHLRDRRRELSGNQFRKLCLREYLHYMRVREWQDL
VRQLTRITAELGWNPVSGGKADPERIHRSLLAGLLSRIGVREGEGREFTGSRNTRFLVHP
SSPVSKKPPRWVMAAEIVETSRLFARDVGRIEPEWVERLAAHLLKHQYSDPHWSAKRGSA
MVAQRSTLYGVPVVAGRQVPYHRVDPEAARDMLIRHGLVAGEWGSRHDFQERNRELLAEA
AAVEDKARRRGLVVDDETLHAFYDARVPREVTTAAHFDRWWRDARAEDPGLLDFDPEQLL
DPEAGSVDGAAFPDLWRQGSLEFALEYRFEPGAADDGVSLRIPMPLLAGVRPEGFDWLVP
GLRAELVEALIRTLPKPLRKTVVPAPDFAAKALERLTPYAAPLTEALADALRALGGTGIS
AGDFRPALLPAHLRMNFAAVDRRGKVVDQDRDLAALQHRQAGQVTAAVSKAAGRAARGAA
NAGGAPAAAAGGAGSAVLLRGPVPEWTAEDLGEIPEEVTTMVDGQRVTAYPALVTTAEGV
AVQVMPTRAQADAAMVTSTLTLLLRGIPVNRAQMVKGLPLQQRVAVDAWPHGGAAGLVED
CRVTVVRDAMLAAGGPVRDPAAYAALREAIAPEVPGGVRRLVVGIAGFMPEYLRIRDQLD
GWTGEAVDDMRGQLEFMLPRGAVARHGWAHLRHMPRYLEAMRIRIEEMDLDPDRDAELED
RVRGVREQLAAKLKTLPEGRRAAPAVRDIGWRIQELRVSLFAQRLGTAGSVSPQRIGREI
AKLR
NT seq
3975 nt
NT seq
+upstream
nt +downstream
nt
gtggccgtggacaagcgggccctgcacgagcgcctcgacggggtcaccatcgccgaggcg
cgcaccttccgccgccggatcaagcgggccggcaccccgcaggcgctctccgccatcggc
gccgacatcgagctggcccgggagcggctcgccgaacgggccaccgggattcccgagatc
cgctaccccgcggagctgccggtctccggccgccgcgacgacatcgccgaggcgatcgag
aaccaccaggtggtggtgatcgccggggagaccggctccggcaagaccacccagatcccg
aagatcctgctggagctgggccgcggggtgcgcggccggatcgggcacacccagccccgc
cggctggccgcgcgcaccgtcgccgagcggatcgccgaggagctcggcgaggacctcggc
gagcacgtcggctacgcgatccgcttcgacgaccgggtgggcccgcgcaccgcggtgaag
ctgatgaccgacggcatcctgctcgccgagatccagcgcgaccggatgctgctcgattac
gacacgatcatcatcgacgaggcccacgagcgcagcctgaacatcgacttcctgctcggc
tacctgcgccggctgctgcccaagcgcccggatctcaagctggtgatcacctcggcgacc
atcgacccggagcgcttcgcccggcatttcgccgacgccgccggtgaacccgccccggta
atcgaggtctccgggcgcacctggccggtggagatccgctaccggccgctgcagcaggag
tacaccgcgaagaacggggagacccgggtacgcgacctggacccggtcgacggggtgatc
gccgcctgcgaggagctcttcgccgccggcgagggcgacatcctctgcttcttcgccggg
gagcgcgacatccgcgaggccgcggaggcgatcgagggccggcgctggcggggcgtggag
gtgctgcccctctacgggcggctgtccaacgccgagcagcaccgggtgttccgcccgcac
gccgggcgccggatcgtgctggccaccaatatcgcggagacctccctgaccgtgcccggg
atccgctacgtggtggacctcggcgacgcccggatctcgcggtactccacgcgcaccaag
gtgcagcggctgcccatcgagccggtgagccgggccagcgccaaccagcgctccgggcgc
tgcggccgcgtcgccgagggcatcgcgatccgcctgtactcggaggaggacttcctctcc
cggcccgagttcaccgacccggagatcctgcgcaccaacctcgccagcgtgatcctgcag
atggcctccctgggactgggcgacatcgcgaagttccccttcgtggaggccccggacggc
aaatccatccgggacggggtgaacctgctcgacgagctcggcgccatcgaacccggcacc
cgcgacgcccccgaggggccgaccctgacccggatcggccgggagctggcccggctgccg
gtggacccgcggctggcccggatgctggtggaggcccgggacaacggggtgctgcccgcg
gtgaccgtgatcgtcgccgcgctgagcctgcaggacgtgcgcgagcgccccgccgagaaa
cgggcccaggccgaccaggcccatgcccgcttccaggaccgggaatcggacttcctcacc
tacctggcgctgtgggagcatctgcgggacaggcgccgcgagctctccggcaaccagttc
cgcaagctctgcctgcgcgagtacctgcactacatgcgggtgcgggaatggcaggacctg
gtgcgccagctcacccggatcaccgcggagctgggctggaacccggtctccggcgggaag
gccgacccggagcggatccaccggtcactgctggccgggctgctctcccggatcggggtg
cgcgagggcgagggccgggagttcaccggcagccgcaacacccgcttcctggtgcacccc
tcctccccggtgtcgaagaagccgccgcggtgggtgatggccgccgagatcgtggagacc
tcccggctcttcgcccgcgacgtcggccggatcgagccggagtgggtggagcggctggcc
gcgcacctgctcaagcaccagtactccgatccgcactggtcggccaagcggggctcggcg
atggtggcgcagcgctccaccctctacggggtgccggtggtcgccggccgccaggtgccc
taccaccgggtggatccggaggcggcccgggacatgctcatccggcatggcctggtcgcc
ggcgaatggggctcccggcacgatttccaggagcgcaaccgggagctgctcgccgaggcc
gccgcggtggaggacaaggcgcgccgccggggcctggtcgtcgacgacgagaccctgcac
gccttctacgacgcccgggtgccccgggaggtcaccaccgccgcgcatttcgaccgctgg
tggcgcgatgcccgggcggaggatccggggctgctggacttcgacccggagcagctgctg
gacccggaggccggctccgtcgacggcgccgccttcccggatctctggcggcagggctcc
ctggagttcgccctggagtaccgcttcgaaccgggcgcggccgatgacggggtgagcctg
cggatcccgatgccgctgctggccggggtgcgccccgagggcttcgactggctggtgccg
gggctgcgcgcggagctggtggaggcgctcatccgcaccctgccgaaaccgctgcgcaag
accgtggtgcccgcccccgatttcgcggccaaggccctggagcggctcaccccctatgcg
gcgccgctgaccgaggcgctggccgatgcgctgcgcgccctcggcggcaccgggatctcc
gccggggatttccgccccgccctgctgccggcgcatctgcggatgaacttcgcggcggtg
gatcgccgcggcaaggtcgtcgaccaggaccgggatctggcggcgctgcagcaccggcag
gccgggcaggtcaccgccgcggtgtccaaggccgccggccgcgccgcccggggcgcggcc
aatgccggcggcgcccccgccgcggccgcgggcggggccggttccgcggtgctgctgcgc
gggccggtgccggaatggaccgcggaggacctcggcgaaatccccgaggaggtcaccacc
atggtcgacgggcagcgggtcaccgcctacccggccctggtcaccaccgccgagggggtg
gcggtgcaggtgatgcccacccgggcgcaggccgatgcggcgatggtgacctccacgctg
accctgctgctgcgcgggatcccggtcaaccgggcgcagatggtcaagggactgccgctg
cagcagcgcgtggccgtggacgcctggccgcacggcggtgccgccggcctggtggaggac
tgccgggtcaccgtggtgcgcgacgcgatgctcgccgccgggggcccggtgcgcgacccg
gcggcctatgcggcgctgcgcgaggcgatcgccccggaggtgcccggcggggtgcgccgg
ctggtggtgggcatcgccgggttcatgccggagtacctgcggatccgggatcagctcgac
ggctggaccggggaggcggtcgacgacatgcgcgggcagctggagttcatgctgccccgc
ggggcggtggcccggcacggctgggcgcatctgcggcatatgccccgttacctggaggcg
atgcggatccggatcgaggagatggacctggacccggatcgggacgcggagctggaggac
cgggtgcgcggggtgcgcgagcagctggcggcgaagctgaagacgctgccggagggccgg
cgggcggcgccggcggtgcgcgacatcgggtggcggatccaggagctgcgggtgagcctg
ttcgcccagcggctgggcaccgccggatcggtgtccccgcagcggatcggccgggagatc
gcgaaactgcgctag
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