Caminicella sporogenes: QNI18_02990
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Entry
QNI18_02990 CDS
T09087
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
cspo
Caminicella sporogenes
Pathway
cspo03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
cspo00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
QNI18_02990 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cspo03021
]
QNI18_02990 (rpoC)
03400 DNA repair and recombination proteins [BR:
cspo03400
]
QNI18_02990 (rpoC)
Enzymes [BR:
cspo01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
QNI18_02990 (rpoC)
Transcription machinery [BR:
cspo03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
QNI18_02990 (rpoC)
DNA repair and recombination proteins [BR:
cspo03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
QNI18_02990 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Peptidase_M23
Apocytochr_F_C
RPOC_hybrid
Radical_SAM
Motif
Other DBs
NCBI-ProteinID:
WIF95600
LinkDB
All DBs
Position
complement(581535..585047)
Genome browser
AA seq
1170 aa
AA seq
DB search
MFELNSFDSIKIGLASPEKIRQWSRGEVKKPETINYRTLKPEKEGLFCEKIFGPTKDWEC
HCGKYKRVRYKGVICDKCGVEVTKSKVRRERMGHIELAAPVSHIWYFKGIPSRMGILLDM
SPRSLEKVLYFASYIVIDPGNTPLSFKQLLTEKEYREYRDKYGNAFKAGMGAEAIKEILQ
KIDLEQLSKELKIKLKESSGQKRVRTIRRLEVVEAFRQSGNKPEWMILDVIPVIPPDLRP
MVQLDGGRFATSDLNDLYRRVINRNNRLKRLLELGAPDIIVRNEKRMLQEAVDALIDNGR
RGRPVTGPGNRPLKSLSDMLKGKQGRFRQNLLGKRVDYSGRSVIVVGPELKFYQCGLPKK
MALELFKPFVMKKLVEDGYVHNIKSAKRMVERVKPEVWDVLEDVIKEHPVLLNRAPTLHR
LGIQAFEPILVEGKAIKLHPLVCTAYNADFDGDQMAVHVPLTVEAQAEARFLMLSVNNIL
APKDGSPITTPTQDMVLGSYYLTIEVEGEPGAGMIFKDYEEMLMAYENKVVGLHSRVKVR
RKLHKDDPGKLVESTVGRFIFNEKIPQDLGFVDRSKDKYSLEIDTLVDKKFLGKIIDKCF
RKHGNTVTAMMLDHIKALGFKFSTRGAITISVSDMEIPKEKERLISEAEEKVDKYKKAYR
RGLISDEERYENVIKTWQETTAKVTDALMNNLGRLNNVYIMAHSGARGSKNQIRQLAGMR
GLMANATGHTVEIPIKSNFREGLSVLEYFISTTGARKGLADTALRTADSGYLTRRLVDVS
QDVIVREIDCGTDEGTEVTAFMDGNELIEPLFDRIAGRYAKEDVVHPETKEVLVREDEMI
TEDIAEKIIEAGIKKVKIRTVLNCKTRHGVCAKCYGKNLATGKPVNVGEAVGIIAAQSIG
EPGTQLTMRTFHTGGVAGADITQGLPRVEELFEARKPKGLAIISEIDGVVTIKDTKKKRE
VIVTSDDGEVKTYQIAYGSRIKVKEGQYIKAGDELSEGSVNPHDILRIKGAQGVEEYLTK
EVQRVYRMQGVDINDKHIEIIVKQMLSRVRIEEPGDTNLLPGGLVSIHELEDENNRVIAE
GGKPATFKRVLLGITKASLATESFLSAASFQETTRVLTEAAIKGKEDKLIGLKENVIIGK
LIPAGTGMKRYRNIAISLNEEKVPMDNNVE
NT seq
3513 nt
NT seq
+upstream
nt +downstream
nt
ttgttcgaacttaatagttttgattcaataaagatcggtttagcttcaccagaaaaaatt
agacaatggtcaaggggagaagtaaaaaaacccgaaactattaattatcgtactttaaaa
cctgaaaaagaaggattgttttgtgaaaagatatttggacctacaaaagattgggaatgt
cattgtggaaaatacaaaagagtaagatataaaggtgtaatatgtgataaatgtggtgtt
gaagtaacaaagtctaaagttagacgtgagagaatggggcatatagaacttgctgcccca
gtatctcacatatggtattttaagggaataccaagtaggatggggatactgcttgatatg
tctccaaggtctttagaaaaagttttatattttgcttcttatattgtaatagacccaggt
aatactcctttgagctttaagcaattgttgactgagaaagaatacagagaatacagagat
aaatatggaaatgcctttaaagcaggaatgggagcagaagctataaaagagatacttcaa
aaaattgatttggaacaattatctaaagaattaaaaattaaattaaaagaaagttcaggt
caaaaaagagttagaacaataagaagattagaagttgtagaagctttcagacagtcaggt
aataagccagagtggatgattttagatgtaattccagttatacctccagaccttagacca
atggttcaacttgatggaggcaggtttgcaacttcagacttgaatgacttatataggaga
gttattaatagaaataacagattaaaaagacttttagaacttggagcaccagatataata
gttagaaatgaaaagagaatgcttcaagaagcagtagatgcacttatagataatggtaga
agaggaagacctgttactggaccgggtaacagaccattaaaatcattatcagatatgcta
aaaggaaagcaaggaagattccgtcaaaatcttttaggtaaacgtgttgactattctgga
cgttctgttatagttgttggaccagagcttaaattttatcagtgtggattgccaaagaaa
atggctcttgagctttttaaaccatttgtcatgaaaaagttagttgaagatggttatgtt
cacaatattaaaagtgctaagagaatggtagaaagagtaaagcctgaagtttgggatgta
ttagaagatgttataaaagagcatcctgtactgcttaaccgtgctccgacacttcacaga
cttggcattcaagcatttgaaccaattttagtcgaaggtaaagctataaaacttcatcct
cttgtttgtacagcttataatgccgactttgacggagaccaaatggcagtccatgtacct
ttaacagttgaagctcaagctgaagcaagatttttaatgctttctgttaataatatttta
gcacctaaagatggttcacctattactacacctacacaggatatggttttaggtagttat
tacttaactatcgaagttgaaggtgaacctggagccggaatgatatttaaagattatgaa
gaaatgctcatggcgtatgaaaataaagttgtagggcttcattcaagggttaaggtcaga
agaaaacttcacaaagatgacccgggaaaattagttgaaagtactgtaggaagatttatt
ttcaatgaaaagatacctcaagaccttggatttgtagatagaagtaaagataaatattca
cttgaaatagatacattagttgataaaaaattcctcggtaaaattatcgataaatgtttt
agaaagcatggtaatacagttacagcaatgatgcttgaccatataaaggctttaggattt
aagttttcaacacgtggtgctattactataagtgtatcagatatggaaatacctaaagaa
aaggaaagacttatttctgaagctgaagaaaaagtagataaatataaaaaggcatataga
agaggtttaatatctgatgaagaaagatatgaaaatgtaattaagacatggcaggaaact
acagctaaagttactgatgctttgatgaacaacttgggtagattaaataatgtgtatatt
atggctcattcaggagcgagaggtagtaaaaaccagataagacagctggctggtatgcgt
ggacttatggcaaatgcaactggtcatactgttgagatacctattaaatcaaacttccgt
gaaggtctttcagttcttgaatattttatatctacaacaggtgctagaaaagggttggca
gatacagcacttagaactgcagactcaggttatttgacaagaaggttagtagatgtaagt
caagatgtaatagttagagaaatagattgtggtacagatgaaggtacagaagttactgca
tttatggatggtaatgaacttattgaaccgttatttgatagaatagctggaagatatgca
aaagaagatgttgttcatcctgaaactaaagaagttttagtaagagaagatgagatgatt
acagaagatatagctgaaaagattatagaagcaggtattaaaaaagttaagattagaaca
gttcttaattgtaagacacgtcatggtgtttgtgctaagtgttatggtaaaaaccttgct
acaggaaagcctgttaatgtaggtgaggcagtaggtataatagcagctcagtcaataggt
gagccgggtactcagcttacaatgagaacattccatactggtggagttgctggtgcagat
attactcaaggtcttccaagggtagaagaattgtttgaagctagaaaaccaaaaggactt
gctattatttcagagatagatggagttgtaactataaaggatacaaagaaaaaacgtgaa
gtaattgtaacgtcagatgatggagaagttaaaacttatcagatagcatatggttcaaga
ataaaagttaaagaaggacagtacattaaggctggagatgagttgtctgaaggttctgtc
aatccgcatgatatattgaggataaaaggtgctcaaggtgttgaagaatatctgactaag
gaagtacaaagagtttatagaatgcaaggtgttgacattaatgataaacatatcgaaata
atagttaagcaaatgctttctagagttagaattgaagaacctggagatactaatttactt
cctggtggacttgtaagtattcatgaattagaagatgaaaacaatagagttatagcagaa
ggtggtaaaccagctacatttaagagagttcttttgggtataacaaaagcttcgttagct
acagagtcatttttatctgctgcttctttccaagaaactactcgtgtattaactgaagct
gcaataaaagggaaagaagataaacttataggacttaaggaaaatgtaataattggtaaa
cttatcccagctggaacgggaatgaagaggtatagaaacattgctatatcattaaatgaa
gaaaaagtacctatggataataatgttgagtag
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