Capnocytophaga sputigena: CGC55_05975
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Entry
CGC55_05975 CDS
T05393
Name
(GenBank) ATP-dependent RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
cspu
Capnocytophaga sputigena
Pathway
cspu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cspu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CGC55_05975
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cspu03019
]
CGC55_05975
03009 Ribosome biogenesis [BR:
cspu03009
]
CGC55_05975
Enzymes [BR:
cspu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
CGC55_05975
Messenger RNA biogenesis [BR:
cspu03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
CGC55_05975
Ribosome biogenesis [BR:
cspu03009
]
Prokaryotic type
rRNA helicases
CGC55_05975
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
Helicase_helical
DbpA
ParB_N
RecG_N
Motif
Other DBs
NCBI-ProteinID:
ATA84081
UniProt:
A0AAX2I9Z5
LinkDB
All DBs
Position
complement(1283515..1285269)
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AA seq
584 aa
AA seq
DB search
MNLFEQLGLDEPILKAISDMGFEIPSEIQQKAIPTLLANGADMVALAQTGTGKTAAFGFP
LLQLIDTDSRVTQGLILSPTRELCLQIASELRNYAKYLPKVNVVAVYGGASIEEQARSLK
KGAQIIVATPGRMQDMIRRNFVDISHINYCVLDEADEMLNMGFYEDITAILSHTPQEKST
WLFSATMPNEVAKIARKFMRKPIEITVGTRNQATNTVQHEYYIVSGRHRYQALKRLADAN
PDIFSVVFCRTKRDTQAVAEKLIEDGYNAAALHGDLSQNQRDLVMKSFRARQIQMLVATD
VAARGIDVDDITHVIHYQLPDEIETYNHRSGRTGRAGKSGISMVILPKSEVKKIKTIEKM
IGQPFEQKQLPSGMEICEIQLYHLANNLKNTEVNPAIDDYLPAIYKELKEVNREELIKKI
FSVEFTRFFNYYKNAENLSVENERESRSGGNSDEVRYFINIGERDGYDWKSLKDFLKATL
NLGRDDVFKVDVKNSFSFFNTDADLSDLVMDTFNDFQLDGRFINVELSTKGAGRDRGGRK
RGNDDGRKHGNDEGRSRKKGQRESRKQKTTEALQQAFKKKKKRK
NT seq
1755 nt
NT seq
+upstream
nt +downstream
nt
atgaatttatttgaacaattaggtcttgatgaacctatcctcaaagccatcagcgatatg
ggctttgaaatcccttctgaaattcagcaaaaagccatccctactcttttggcgaatggt
gctgatatggtagctttagcccaaacgggtactggtaaaacagccgctttcggctttcct
ctcctccaacttatcgatactgatagccgtgtaactcaaggtcttatcctttcacctaca
cgcgaactctgcttgcaaatcgcttccgagctccgcaattatgctaagtacctccctaag
gtgaacgtagtggcggtatatggcggcgcaagtattgaggaacaagcgcgtagcctcaaa
aaaggcgcacaaattatcgtggctactcctggacgtatgcaagatatgatacgccgtaac
ttcgtagatatcagtcatatcaactattgtgtactggacgaagccgacgaaatgctcaat
atgggcttctatgaagatattaccgctattctgtcgcatactcctcaagaaaaaagcact
tggctcttttcggctactatgcctaacgaggtggctaagatagcccgtaagtttatgcgc
aagcctattgaaataacagtaggaactcgcaatcaggctactaacaccgtgcaacacgag
tactatatagtgagcggtcgccatagataccaagccctaaaacgcctcgctgatgctaac
cccgatatcttctcggtagtgttttgccgcaccaaacgcgatacacaggcagtagccgaa
aaacttatcgaagacggttataatgccgctgctcttcacggcgatttaagtcagaatcag
cgcgatttggtgatgaaatctttccgcgcacgccaaatacaaatgctcgttgctaccgat
gtagctgcccgcggtatcgatgtagacgatatcacccacgtaattcactaccaattgccc
gacgaaatagaaacctacaatcaccgcagtgggcgtacaggtcgtgctggtaaatcggga
atttcgatggtaattttgccaaaaagcgaggtaaagaaaatcaaaactatcgaaaagatg
atagggcaaccttttgagcagaaacaattgccatcgggtatggaaatctgtgaaatacag
ctctatcacttggctaacaacctcaaaaatacagaagtaaaccctgctatcgacgattat
ttaccagctatctataaagaactgaaagaagtaaatcgtgaagagctcatcaaaaaaata
ttctcagtagagtttacgcgtttcttcaattattataaaaatgctgaaaacttatcggta
gagaacgagcgcgaaagccgcagtgggggtaatagcgatgaagtgcgctatttcatcaac
ataggtgaacgcgatggttacgactggaaatcgctcaaagatttcctcaaagcaaccctt
aatttaggtcgtgatgatgttttcaaagtagatgtaaagaacagtttctctttcttcaat
accgatgccgacctttccgatttggtgatggatactttcaacgacttccaattagacggt
cgctttatcaatgtagaactctcaaccaaaggtgctggcagagaccgtggcggacgcaaa
cgcggaaatgatgacggtagaaaacatggtaacgacgaggggagaagtcgcaaaaaagga
caaagagaaagtcgtaaacaaaagaccaccgaagcccttcaacaggcgtttaaaaagaag
aaaaaacgtaaataa
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