Clostridium scatologenes: CSCA_1498
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Entry
CSCA_1498 CDS
T03803
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
csq
Clostridium scatologenes
Pathway
csq03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
csq00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CSCA_1498
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
csq03019
]
CSCA_1498
03400 DNA repair and recombination proteins [BR:
csq03400
]
CSCA_1498
Enzymes [BR:
csq01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
CSCA_1498
Messenger RNA biogenesis [BR:
csq03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
CSCA_1498
DNA repair and recombination proteins [BR:
csq03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
CSCA_1498
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
DEAD
HTH_40
Helicase_C
HRDC
RecQ_Zn_bind
ResIII
Helicase_Sgs1
RecQ-1-like_HTH
Motif
Other DBs
NCBI-ProteinID:
AKA68623
UniProt:
A0A0E3JMX7
LinkDB
All DBs
Position
complement(1613811..1615946)
Genome browser
AA seq
711 aa
AA seq
DB search
MLEEAKVLLKKYYGYDSFREGQEKVINSILEGRDTFAIMPTGAGKSICYQIPALLMKGIT
IVISPLISLMKDQVDALNDIGVKASFINSSLDQYELQERILMAVSGYTKLLYVAPERLES
ESFCELIKTLNISMIAIDECHCVSQWGHDFRPSYRSIAPLIKKLDHKPIVSAFTATATNE
VKEDVVKLLGLKDSNVYTTGFDRKNLYFSVVRGENKKDYLLKYLENNKDQVGIIYAGTRK
EVDDIYESLKKKGYSIGKYHAGMSDTARTKAQEDFLYDNVNIIVATNAFGMGIDKSNVRY
VIHYNIPKNIEAYYQEAGRAGRDGEPSECILLFGAQDIMLQKFLIEQSIFSEERRINEYR
KLQDVVDYCHTTKCLRKFILEYFGETDVPEFCDNCSVCKDETELSDITIDAQKIFSCIAR
MKQRFGTVLVSQVLRGSKDKKVLDFGFEKLSTYGIMKNYTVKEIKDLINVLIADEYLYLT
ESQFPVVRLKEKAVSVLKGEENVFQKIHKTKKKVVQENSLFLLLKSLRKTISEREAVPPY
IIFADAALRDMSEKLPENDEEFLDIKGVGESKLRKYGEEFLNIIRDYIKEHPSEKTPNKT
MKELKEDLSEKHDVPSHVITLNMFNEGKSLEEISKERNLKFMTIEDHIMRCAMEGMDVNL
DFFIPKEYEECIFQAIEKSDSTKLRNIKEMLPEEVSYTAIKAALCKMKNSA
NT seq
2136 nt
NT seq
+upstream
nt +downstream
nt
atgcttgaagaggctaaagttttgttaaaaaaatattatggatatgatagttttagagaa
ggtcaagaaaaggtaataaatagtatattggaaggaagagatacctttgctataatgcct
acaggtgcaggtaagtctatatgttatcaaatacctgctcttttaatgaaggggataaca
atagtgatatctccattgatatctctaatgaaggatcaagtagatgctcttaatgatata
ggagtaaaggcaagttttataaatagttcattggatcagtatgaacttcaagaaagaata
ttaatggcagtaagtggatatacgaaacttttatatgttgcaccagaaagattggaatct
gaaagtttttgtgagcttataaagacacttaatatatcaatgattgctatagatgaatgt
cactgtgtttcacaatgggggcatgattttagaccgagttataggtctattgcaccatta
ataaaaaaattagaccataaacctatagtttcagcttttacagctacagcaactaatgaa
gttaaggaagatgtagtaaagcttttgggtcttaaagattctaatgtgtatactacaggt
tttgatagaaaaaatttatatttttctgtggttaggggagaaaataagaaagattatcta
cttaagtatttagaaaataataaagatcaagttggaataatttacgcagggactagaaaa
gaagtggacgatatttatgaatctcttaaaaagaaaggttattctataggaaaatatcat
gcaggtatgagtgatacagctagaacaaaagctcaagaggattttttgtatgataatgta
aatataattgtggctactaatgcctttggaatgggaattgataaatctaacgtaagatat
gttatacattataatatacctaagaatattgaagcatattatcaagaagcaggacgtgca
ggaagagatggagaaccaagtgaatgtattttattatttggagctcaggatattatgctt
caaaagtttctcatagagcaaagcatattttcagaagaaagaagaattaatgaatacagg
aagcttcaggatgttgttgattattgtcatactactaaatgtcttagaaagtttatttta
gaatattttggggaaactgatgtgccagagttttgtgataattgtagtgtgtgtaaggat
gagacggagctttcagacataaccatagatgctcaaaagatattttcatgtatagctcgt
atgaagcagaggtttggcactgttttagtatcacaggtactaagaggttcaaaggataaa
aaagtgttagattttggatttgaaaaactttctacttatggaataatgaaaaattatact
gtaaaggaaataaaggatttaataaatgtacttatagcagatgaatatttatatcttact
gaaagccaatttcctgtagtaagacttaaggaaaaggcagtaagtgttcttaaaggtgaa
gaaaatgtatttcaaaaaattcataagactaagaagaaagttgttcaagaaaactctctt
tttttgctgcttaaatctcttagaaaaactatatcggaaagagaggcagtacctccttat
ataatttttgcagatgcagctttaagagatatgagtgaaaaacttcctgaaaatgatgaa
gagtttcttgacattaaaggcgtcggagagtcaaagcttcgaaaatatggagaagaattt
ctaaatattataagagattatataaaagaacatccttcagaaaagactccgaataaaact
atgaaagaattaaaggaagatttgtctgaaaaacatgatgttccaagtcatgttataact
ttaaatatgtttaatgaaggaaaatcattagaagaaataagcaaggaaagaaacttgaaa
tttatgactattgaggatcacataatgagatgtgccatggagggaatggatgtaaatcta
gatttttttataccaaaagagtatgaagaatgcatttttcaagctatagaaaaatcagat
agtacaaaattaagaaatataaaagaaatgcttccagaagaggtaagttataccgctata
aaagcagctttatgcaaaatgaaaaattctgcataa
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