KEGG   Clostridium scatologenes: CSCA_3901
Entry
CSCA_3901         CDS       T03803                                 
Name
(GenBank) helicase, RecD/TraA family
  KO
K03581  exodeoxyribonuclease V alpha subunit [EC:3.1.11.5]
Organism
csq  Clostridium scatologenes
Pathway
csq03440  Homologous recombination
Brite
KEGG Orthology (KO) [BR:csq00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03440 Homologous recombination
    CSCA_3901
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:csq03400]
    CSCA_3901
Enzymes [BR:csq01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.11  Exodeoxyribonucleases producing 5'-phosphomonoesters
    3.1.11.5  exodeoxyribonuclease V
     CSCA_3901
DNA repair and recombination proteins [BR:csq03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   HR (homologous recombination)
    RecBC pathway proteins
     CSCA_3901
SSDB
Motif
Pfam: AAA_19 AAA_30 HHH_RecD2 OB_YrrC SH3_13 UvrD_C_2 Viral_helicase1 HHH_5 AAA_11 NAT10_TcmA_helicase PIF1 PhoH AAA_22 SLFN-g3_helicase DEAD nSTAND3 DNA_pol_lambd_f UvrD_C HerA_C AAA_23 AAA SRP54 AAA_28 HHH_2 AAA_29 AAA_12 HHH_3 AAA_5 Mg_chelatase ABC_ATPase AAA_16 UvrD-helicase
Other DBs
NCBI-ProteinID: AKA71026
UniProt: A0A0E3GRW4
LinkDB
Position
complement(4216918..4219173)
AA seq 751 aa
MQQIQGVVENIVFQNEENGYAVAKIKEKSESITIVGCIPFIMEGQNLKLIGEWVLHPQFG
QQFKVSGCEEIVPNSIVGIERYLSSGIISGIGPVTAKKIVEKFGEKTLDILDNHIERLKE
IEGIGAKKIALIDASYSKQNEVRNIMVFLQTYGVTPNQCVKIHKRFGTESIKIVKENPYI
LTEEISGIGFKTSDKIARSLGIDVNSPFRIQSGIRYIINQFCGLGNTYMPLEKLLKEGIS
ILGVTKEKIEENIYDSSINGKLKLEKFEDKLCVFTIPYYYCELGVTKKILTLAVNDYGGM
KINVDEEIESFENDNCIKFADSQKEAIKGAVENGVEIITGGPGTGKTTIINCITEIFEKL
KLRVFMAAPTGRAAKRMTEATGREAKTIHRLLEMGVGDEEEPSMLFSKGENSPLECDVII
IDEASMIDIMLMNNLLKAVDVSTRIIIVGDVDQLPSVGPGNVLRDLIESRCIKVVRLKEI
FRQSTESMIVVNAHKINNGEMPLMNQKNKDFYFIKCEDVDKITDTLISLVDKRLPNFNKK
WNKINDIQILSPMRKGVLGVSNLNKKLQDILNPKAQNKKEKEFRDTVFRVGDKIMQTKNN
YSLKWTRVSGEGECEGVGIFNGDVGFIQDIDEDKDTVDIIFDDERKVIYDNMYLDEIDLA
YAVTIHKSQGSEFPVVIIPMYMGAPLLMNRNLLYTAITRAKQLVVLVGELKAIKFMIDND
RSFERYSLLKHRIMDIMESEVNVVVSEDEVE
NT seq 2256 nt   +upstreamnt  +downstreamnt
atgcagcaaatacaaggtgtagttgaaaatatagtttttcaaaatgaggaaaatggatat
gctgtggcgaaaattaaagagaaaagtgaaagtataactatagtaggatgtatacctttt
attatggagggtcaaaatttaaagcttataggtgaatgggttcttcatccacaatttgga
cagcaatttaaagtttctggatgtgaagaaatagttcctaattctatagttggtatagaa
agatatttatcatcaggaataatatctggtattggacctgttacagctaaaaaaatagta
gaaaagtttggtgaaaagactttagatatattggataatcacatagaaaggcttaaggaa
atagaaggtataggcgcaaaaaaaatagcgttaatagatgcttcttattctaagcaaaat
gaagtaagaaatataatggtttttttgcagacttatggagtcactccaaaccaatgtgtt
aagatacataaaaggtttggaacagaatctataaaaattgtaaaagaaaatccatatata
ttgacagaagaaatatctgggataggatttaaaacatcagataagattgcaagaagtctt
ggtatagatgtaaattctccttttagaatacaaagtggaataaggtacattataaatcaa
ttttgtggccttggaaatacatatatgccgttagagaagttacttaaagagggaattagt
atattaggagtgactaaagaaaaaattgaagagaatatatatgatagctctataaatgga
aaactaaagttggaaaaatttgaagataaattatgtgtatttacaattccatactattat
tgtgagcttggagttacaaaaaagatactcactttagctgtaaatgattatggtggtatg
aagataaatgtagatgaagaaatagagagttttgaaaatgataattgtataaagtttgcg
gattcacaaaaagaagctataaaaggtgccgtagagaatggagttgaaataataactggg
ggaccaggtacaggaaaaactactattataaattgtataacagaaatatttgaaaaactt
aagcttagggtctttatggcagcaccaacaggaagagctgctaaaaggatgacagaagct
acaggacgtgaagctaaaacaattcataggcttttggaaatgggagtaggagatgaagaa
gaaccaagtatgctattttctaaaggtgaaaattctcctttagagtgtgatgtcattata
atagatgaagcttccatgatagatattatgcttatgaataaccttttgaaggcagttgac
gtaagtacaagaattataattgtaggagatgtagatcaacttccatcagtaggtcctgga
aatgtattgcgtgatttaattgaaagcagatgtattaaggttgttaggctcaaggaaatt
tttagacaatcaacagaaagcatgatagtagttaatgcacataaaattaataatggagaa
atgcctttaatgaatcaaaaaaacaaggatttttatttcataaaatgtgaagatgtagat
aaaataacagatacattaatatctcttgtagataaaagactgcctaactttaataaaaaa
tggaataaaatcaatgatatacagatactttcacctatgagaaaaggggttttgggagtt
tctaatctaaataaaaaacttcaggatattttaaatcctaaagctcaaaataaaaaggaa
aaagaatttagagatacagtatttagggtcggagataaaataatgcaaacgaaaaataat
tattccttgaaatggactagagtttcaggagaaggtgaatgtgaaggagtaggcattttt
aatggagatgttggatttatacaggatatagatgaagataaggatactgtagatataata
tttgatgatgaaagaaaagttatatatgacaacatgtatttagatgaaattgatttagct
tatgctgtaactatccataagagtcagggaagtgaatttcctgtagttattatacctatg
tatatgggtgcgccattattaatgaatagaaacttattgtatacagctattactagagcc
aaacaattagttgttttagtaggagaattaaaagctataaaatttatgatagataatgat
agaagttttgaaagatattcgttattaaaacatagaataatggatataatggagagtgaa
gtaaatgttgttgtttcagaagatgaggttgaataa

DBGET integrated database retrieval system