Clostridium scatologenes: CSCA_3936
Help
Entry
CSCA_3936 CDS
T03803
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
csq
Clostridium scatologenes
Pathway
csq03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
csq00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CSCA_3936
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
csq03021
]
CSCA_3936
03019 Messenger RNA biogenesis [BR:
csq03019
]
CSCA_3936
Transcription machinery [BR:
csq03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
CSCA_3936
Messenger RNA biogenesis [BR:
csq03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
CSCA_3936
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
S1CSD-TOTE-2
Spore_III_AA
AAA_22
NACHT
SAP
AAA_25
AAA
Motif
Other DBs
NCBI-ProteinID:
AKA71061
UniProt:
A0A0E3GRX1
LinkDB
All DBs
Position
complement(4247452..4248963)
Genome browser
AA seq
503 aa
AA seq
DB search
MTKDIEGMTVAELKVLAKSLGIKNISRYKKSELMEEIKKVSPASIEKDGKILREKISPKS
ESIANDNEVQSGREIKNQETKVVTDKKVVADKVEEHKNSEEHKNSEEHKTNEEEKREKLK
EMINESDTARGVLEIIENNNYGFLRGRNYLTGPDDIYVSPSQIRRFNLKTGDEVQGKVRI
PKEGEKFKALLYVEKVNGENPERAVGRKPFETLIPIYPNQRLNLETNRENLSTRLMDIIS
PIGKGQRGIIVAPPKAGKTTLLKRIAQSISANHPLVKLIVVLIDERPEEVTDMQRNIKGE
VIYSTFDEEPEHHTKVAYMVLERAKRMVEQGQDVVILLDSITRLSRAYNLTITPTGRTLS
GGLDPGALIMPKKFFGAARNIEEGGSLTILATALVETGSRMDDMIFEEFKGTGNMEVHLN
RRLQERRIFPAIDVYKSGTRRDDLLFENQAEKDAAFNIRKVLYDENNTQNVTEQLINLLS
KTKNNEEFINLASKMDMTKNVDK
NT seq
1512 nt
NT seq
+upstream
nt +downstream
nt
gtgactaaggatatagagggcatgactgttgctgagttgaaagtattggcaaaaagtctt
ggaattaagaatatatctaggtataaaaaatctgaattgatggaagaaattaaaaaagtt
tctcctgcatctattgaaaaggatggaaaaatacttagagaaaaaataagccctaaaagt
gaatcaatagctaatgacaatgaagttcagtcaggaagagaaataaaaaatcaagagaca
aaagtagtgactgataaaaaagtagtagctgataaagttgaagaacataaaaacagtgaa
gaacataaaaacagtgaagagcataaaaccaatgaagaagaaaaaagagaaaagcttaaa
gagatgataaatgaatctgatacagcaagaggagtactagaaataatagaaaataataat
tatggattcttaagaggcagaaattatttaacgggaccagatgatatatatgtatcccca
tctcaaataagaagatttaatttaaaaactggtgatgaagttcaaggaaaagttagaatt
cctaaagaaggagaaaagtttaaggcactgctctatgtagaaaaggtaaatggtgaaaat
ccagaaagagcagttggaagaaaaccatttgaaactcttattcctatctatccaaatcaa
agattgaatctagagactaatcgggaaaatttatcaacaagacttatggatataatatct
cctataggtaaaggacaaaggggaattatagttgctccgcctaaagcaggtaaaaccact
cttctaaaaaggatagctcaaagtatatctgcaaatcatccattagttaaactcattgtt
gttttaatagatgaaagacctgaagaagttacagacatgcaaaggaatattaaaggtgaa
gttatttactcaacatttgatgaagaacctgaacaccatacaaaagttgcgtatatggta
cttgaaagagcaaaaagaatggtagaacagggtcaggatgtagtaattttactagatagt
ataacaagactttctagagcatataatttaactataactcctacaggaagaaccctttca
ggtggattagatccaggagcattaataatgcctaaaaagttttttggtgcagcaagaaat
atagaagaaggtggtagccttactatacttgctacagcgcttgtagaaacaggaagcaga
atggatgatatgatatttgaagaatttaagggtacaggaaatatggaagtacatcttaat
agaagacttcaagagagaagaatattccctgctatagatgtatataaatcaggaacaaga
agagatgatttattatttgaaaatcaagcagagaaagatgctgcatttaacataagaaaa
gttttatatgatgaaaacaatactcaaaatgttacagagcagttaataaatcttctgtca
aagacaaaaaataatgaagagtttataaatttggctagcaaaatggatatgactaagaac
gtggataaataa
DBGET
integrated database retrieval system
