Clostridium scatologenes: CSCA_4030
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Entry
CSCA_4030 CDS
T03803
Name
(GenBank) HD domain protein
KO
K00970
poly(A) polymerase [EC:
2.7.7.19
]
Organism
csq
Clostridium scatologenes
Pathway
csq03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
csq00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CSCA_4030
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
csq03019
]
CSCA_4030
Enzymes [BR:
csq01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.19 polynucleotide adenylyltransferase
CSCA_4030
Messenger RNA biogenesis [BR:
csq03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
CSCA_4030
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PolyA_pol
PolyA_pol_RNAbd
HD
Motif
Other DBs
NCBI-ProteinID:
AKA71155
UniProt:
A0A0E3K3C6
LinkDB
All DBs
Position
complement(4348487..4349704)
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AA seq
405 aa
AA seq
DB search
MNSSNEFLKVLKESLNEVGGEAYLVGTFVRERLMDFKSQPSRLDIIYNGDINKLLMSLDN
KQFSFYSLKENKDTYRYSGTNVVFNIAKMKGKNIEEDLGKRDFSINAICLKLIENKIIDP
FNGRKAIKCRIIQSIRDTSIEEDPIRILRGIRFCIRYGMHFNLETENKIVDLSYKLKNSN
KERIFTELMKLMEIDDNGRVFEVLDSYGILKNIFPYMEELKTVGKCKYHIEDAFTHMKLT
YEVFKDVVKGRIKIEGLNLKHLEDCIDSFKIRECVSLACFLHDIGKFNCYKEKEDSVSFL
GHEKEGAKIVNDICKDMRVPKKSAQLVEELVEAHMCPLEIFKMDENKRMEAAHKFFERYD
KYFEFILIISLCDNYATYDSLYEDTRKHEYKKFIEKMICKYKFQK
NT seq
1218 nt
NT seq
+upstream
nt +downstream
nt
atgaatagttcaaatgaatttttaaaagtgttaaaggaatctttaaatgaagtaggaggt
gaagcatatttagtagggacatttgttagagaaagacttatggattttaaaagtcaacca
tctagactagatattatatataatggagatataaacaagttattaatgtctttagataac
aaacaattcagcttttattctctaaaagaaaataaagatacttatagatatagtggtaca
aatgtagtttttaatatagccaaaatgaaaggaaaaaatattgaagaagatttaggtaaa
agagatttttctataaatgcaatttgtcttaaacttatagaaaataaaataatagatcct
tttaacggaagaaaagctataaagtgtaggattattcaaagtataagagatacaagtata
gaagaagatccaattagaattctaagaggtattagattttgtataagatatggtatgcat
tttaatttagaaacagagaataaaatagtggatttatcttataaacttaaaaatagtaat
aaggaacgaatatttactgaactcatgaagttaatggagatagatgataatggtagagtt
tttgaagttttggatagttatggtattctaaaaaacatatttccttatatggaggaatta
aaaactgtaggaaagtgtaaatatcacatagaagatgcatttactcatatgaagttaact
tatgaggtgtttaaggatgtagttaaaggaagaataaaaatagaaggacttaatttgaag
catttagaagattgtatagacagttttaaaataagagaatgtgtaagtcttgcatgtttt
ttacatgacataggaaagtttaactgttataaagagaaagaagatagtgtaagctttttg
ggacatgaaaaagaaggagctaaaatagttaatgatatatgcaaagatatgagagttcct
aaaaaatcagctcagcttgtagaagaacttgtagaagcacatatgtgtccattagaaatt
tttaaaatggatgaaaataaaagaatggaagcagcccataagttctttgaaaggtatgat
aaatactttgaatttatactaattatttcactatgtgacaactatgcaacttatgattct
ttatacgaagataccagaaaacatgaatataagaagtttattgaaaagatgatttgtaag
tataagtttcaaaaataa
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