Clostridium scatologenes: CSCA_4279
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Entry
CSCA_4279 CDS
T03803
Name
(GenBank) DNA-directed RNA polymerase, beta' subunit
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
csq
Clostridium scatologenes
Pathway
csq03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
csq00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
CSCA_4279
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
csq03021
]
CSCA_4279
03400 DNA repair and recombination proteins [BR:
csq03400
]
CSCA_4279
Enzymes [BR:
csq01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
CSCA_4279
Transcription machinery [BR:
csq03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
CSCA_4279
DNA repair and recombination proteins [BR:
csq03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
CSCA_4279
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RPOC_hybrid
Apocytochr_F_C
Motif
Other DBs
NCBI-ProteinID:
AKA71404
UniProt:
A0A0E3JR38
LinkDB
All DBs
Position
4625596..4629135
Genome browser
AA seq
1179 aa
AA seq
DB search
MFELNNFDALQIGLASPEKIREWSRGEVKKPETINYRTLKPERDGLFCERIFGPIKDWEC
HCGKYKRIRYKGIVCDRCGVEVTKAKVRRERMGHIELAAPVSHIWYFKGIPSRMGLILDM
SPRALEKILYFASYVVLDPKETPLLKKQLLNEKEYREAVDKYGDESFVAGMGAESVKRLL
EEIDLEQSSIELKEDLKNSTGQKKVRIIRRLEVVESFRKSRNRPEWMIIDVIPVIPPDLR
PMVQLDGGRFATSDLNDLYRRVINRNNRLKKLLDLGAPDIIVRNEKRMLQEAVDALIDNG
RRGRPVTGPGNRPLKSLSDMLKGKQGRFRQNLLGKRVDYSGRSVIVVGPELKMYQCGLPK
EMALELFKPFVMKKLVESGVAHNIKSAKRMVERVQSQVWDVLEEVISDHPVLLNRAPTLH
RLGIQAFQPVLVEGRAIKLHPLACTAYNADFDGDQMAVHVPLSVEAQSEARFLMLAAHNI
MKPSDGKPVVIPTQDMVLGSYYLTIDKDGELGEGRYFSSPDEVIMVYQLKQISIHAKIKV
KMSKIEDGKLVTGIIDTTPGKIIFNESIPQNLGFIDRSLPENEFKLEVDFLVTKKNLGKI
IDKCYMRHGATKTSIMLDKIKAKGYHYSSIGAITVSTSDMEVPEAKKTLLAESDAAVDKI
QKMYRRGFISEDERYERVIERWTKTTEDVADALMDNLDRFNPIFMMADSGARGSKSQIKQ
LAGMRGLMANPSGKIIELPIRASFREGLNVMEYFISTHGARKGNADTALKTADSGYLTRR
LVDVSQDVIVREEDCGTQEGYDVSEIKEGNEVIESLAERLTGRYSAEDIMDPNTGEILVH
KNDYMDSKIAEKVDKLGIKKVTIRSVFTCKSKHGVCSKCYGMNMATAQKISIGESVGIIA
AQSIGEPGTQLTMRTFHTGGVAGSDITQGLPRVEELFEARKPKGLAIVSEVSGTVKMEET
KKKRTISVITDAGEEVTYDIPFGSRIKVSNGDAISAGDEITEGSVNPHDIIRIKGVLGVK
NYLLSEVQKVYRLQGVDINDKHLEVVVRQMTRKIKIEDSGDTELLPGTMIDMFDFDEENA
KAEARGERPAQGRVALLGITKAALATDSFLSAASFQETTRVLTDAAIKGKVDPLLGLKEN
VIIGKLIPAGTGMTRYRSIKINTEKESEEKQIINNEIEV
NT seq
3540 nt
NT seq
+upstream
nt +downstream
nt
ttgtttgaattaaataattttgatgcattacaaatagggttggcttcaccagaaaaaata
agagaatggtcaagaggtgaagtaaaaaagcctgaaacaataaattacagaactttgaaa
cctgaaagagacgggctattttgtgaaagaatttttggacctataaaagactgggaatgt
cactgtggtaaatataaaagaataagatataaaggcatagtatgtgatagatgtggtgtt
gaagttactaaagctaaagtaaggcgtgagagaatgggccatatagaattggcggcacca
gtatctcatatttggtactttaagggaataccatcacgtatgggactcatattagatatg
tcaccaagagcactagaaaaaatactatattttgcatcttatgttgtgttggatcctaaa
gaaactccattactaaaaaaacaattgctaaatgaaaaagaatatagagaagctgttgat
aaatatggtgatgaaagttttgttgctggaatgggtgctgaatctgttaaaagacttttg
gaagaaatagatttggaacaatcatctattgagttaaaagaggatttaaaaaatagcaca
ggacaaaagaaagtaagaataataagaagacttgaggtagtagagtcatttagaaaatct
agaaataggcctgaatggatgatcatagatgtaattcctgtaattcctccagatttaaga
cctatggtccaacttgatggtggaagatttgcaacatcagatttaaatgacctttacaga
agagttattaatagaaataatagacttaaaaagcttttagatttaggtgcaccagacata
atagttagaaacgaaaaaagaatgcttcaagaagcagtagatgcacttatagataatgga
agaaggggaagaccagtaactggtcctggaaatagaccgctaaaatcattatctgatatg
ttaaagggtaagcaaggaagatttaggcaaaacttgcttggaaaacgtgtcgactattca
ggccgttcagttatagttgttggacctgaacttaagatgtatcagtgcggacttccaaaa
gaaatggcacttgaattatttaaaccttttgtaatgaaaaagcttgttgaaagtggagta
gcacataatataaagagtgctaagagaatggttgaaagagtccaatctcaagtatgggat
gtacttgaagaagtaatatctgatcatccagtactactaaaccgtgctccgactcttcat
agattgggaattcaagcatttcaacctgtacttgtagaaggtagagctataaaacttcat
cctttagcgtgtacagcatataatgcagattttgatggagaccaaatggcagtccatgtt
ccactatctgttgaagcacaatcagaagctagatttttaatgcttgctgcacataacata
atgaaaccatcagatggtaagccagttgttattcctactcaggatatggtactaggttca
tattatctaacaatagataaggatggagaattaggagaaggaagatacttctcatcgcca
gatgaagtaattatggtttatcaactaaaacaaattagtattcatgctaagataaaagta
aaaatgagcaaaattgaagatggaaaacttgttactggaataatagatacaacaccagga
aaaataatatttaacgaatcaataccacaaaatttaggatttatagatagaagtcttcca
gaaaatgagtttaaattagaagtagatttccttgtaacaaagaaaaaccttggtaaaatt
atagataaatgttacatgagacatggagctactaaaacatctataatgcttgataagata
aaagctaaaggatatcactattcaagtataggagctattactgtttctacttcagatatg
gaagttcctgaagctaagaaaacattgcttgcagaatctgatgcagcagttgataaaatt
cagaaaatgtatagaagaggtttcatatctgaagatgaaagatatgaaagagttatagaa
agatggactaaaacaacagaagatgttgcagatgcacttatggataatttggatagattt
aatccaatattcatgatggcggactcaggagccagaggttctaagagccaaattaagcag
cttgctggtatgagaggccttatggctaacccatctggtaagattatagaattgcctata
agagcttcattcagagaaggtctaaacgtaatggaatactttatatcaactcatggagct
agaaaaggtaatgctgatactgctttaaagactgcagactcaggatatttgacaagaagg
ttagttgatgtaagccaagatgttattgtaagagaagaagattgtggaacacaagaagga
tacgatgtttctgagataaaagaaggaaatgaagtaatagaaagcttagcggaaagactt
acaggaagatactcagcagaagatataatggatccaaatactggtgaaatattagttcac
aaaaatgattatatggatagtaagattgcagagaaagttgataagctaggaattaaaaaa
gtaacaattagatctgtattcacatgtaaatctaaacacggagtatgttcaaaatgttat
ggaatgaacatggcaactgctcaaaaaataagtataggtgaatctgttggtataatagca
gcacaaagtataggggagcccggtactcagcttactatgagaactttccatactggtgga
gttgctggatctgatataactcaaggtcttccaagagttgaggaattatttgaggctaga
aaacctaaaggtcttgctatagtaagtgaagtttctggtactgtaaaaatggaagaaact
aagaagaagagaactatttctgtaattacagatgcaggtgaagaagtaacttatgatata
ccatttggttcaagaattaaggtatctaatggagatgcaataagtgctggagatgaaata
acagaaggttctgttaatccgcatgatataataagaattaaaggtgttttaggagttaaa
aattatcttctatctgaagttcaaaaagtttatagattacaaggtgttgatataaatgat
aaacatcttgaagtagtagtaagacagatgacaagaaaaataaaaatagaagattctggt
gatacagaattattaccaggaacaatgatagatatgtttgattttgatgaagaaaatgca
aaagcagaagctagaggtgaaagaccagcacaaggtagagttgcattacttggtataact
aaagctgctttggctacagattcattcctttcagctgcttcattccaagagacaacaaga
gtacttactgatgcagctattaaaggaaaagttgatcctctattaggattaaaagaaaat
gtaatcattggtaagttgatacctgctggaacaggtatgacaagatatagatctatcaaa
atcaatactgaaaaagagtcagaggaaaaacaaatcattaataatgaaatagaagtgtaa
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