Clostridium scatologenes: CSCA_4678
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Entry
CSCA_4678 CDS
T03803
Name
(GenBank) DEAD/DEAH box helicase domain protein
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
csq
Clostridium scatologenes
Pathway
csq03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
csq00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CSCA_4678
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
csq03019
]
CSCA_4678
03009 Ribosome biogenesis [BR:
csq03009
]
CSCA_4678
Enzymes [BR:
csq01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
CSCA_4678
Messenger RNA biogenesis [BR:
csq03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
CSCA_4678
Ribosome biogenesis [BR:
csq03009
]
Prokaryotic type
rRNA helicases
CSCA_4678
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
T6PP_C
AAA_19
AAA_30
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
AKA71803
UniProt:
A0A0E3MBL0
LinkDB
All DBs
Position
complement(5061999..5063582)
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AA seq
527 aa
AA seq
DB search
MENIKFSDLNLHKKVLQAIDAMGFEEPSQIQAEAIPVILSGSDMIGQAQTGTGKTLAFGA
PVLSQIESSDKISALILTPTRELAIQVNDELARIAKFKRTKLLPVYGGQPIDRQIKSLRR
GVDVVVGTPGRILDHIKRNTLDLSGVKFLVLDESDEMLNMGFIDDIEEIIKSLNKDRQTL
LFSATMPKEIAKLASKYMKNEVKHIKIVKNSLTVEKIKQYYYEVKHKDRFESLCRILDID
EPSSAIIFCKTKRGVDELVESMQGRGYNVEGMHGDMGQNQRLNTLRKFKEGTLDFLVATD
VAARGIDVDDVSHVINYDLPQDMESYVHRIGRTGRANKEGIAYSLVTPREYIMIKQLEKF
TKSKIKRKEIPTLDEIFEAKYNSMLKDVKNTLEQNDYKDFIPVATGLDDDYNLVDVAAAL
MKMLFDREFNFDYNEDLSVKSTKPVRLFLSVGRIDKVTPVKILNFLEETSDIDVNEVGDI
DIFDKFTFIDLPEDLLDAVLSRSSGKRLNGRRVNIEVAKSKNNHSRK
NT seq
1584 nt
NT seq
+upstream
nt +downstream
nt
atggaaaatattaaatttagtgatttaaaccttcataaaaaggttttacaagctatagac
gctatgggttttgaagaaccttctcaaatccaagctgaagcaatacctgttattttatca
ggtagtgatatgataggtcaagcacaaactggtacaggtaagactttagcttttggtgct
cctgtattaagtcaaatagaatctagtgataaaatatctgccttaatacttactccaaca
agagaactagcaatacaagtaaatgacgagttagctcgtattgcaaaatttaaaagaaca
aaattacttcctgtatatggtggtcagccaattgatagacaaataaaatccttaagaaga
ggcgtagatgttgttgttggaactcctggtagaattttagaccacataaaaagaaacact
ttggatttaagtggtgttaaattcttagttttggatgaatctgacgaaatgcttaatatg
ggatttatagatgatatagaagagattataaagtccttaaacaaggatagacagacactt
cttttctctgcaactatgccaaaagaaatagcaaaacttgcttctaagtacatgaaaaat
gaagtaaagcatataaaaatagttaaaaattctttaactgttgaaaaaattaagcagtat
tattatgaagtaaaacataaagatcgttttgaatcattatgtaggatcttagatatagat
gaaccttctagtgctataatcttttgtaagactaaaagaggcgtagatgaacttgtagaa
tctatgcaaggaagaggatataatgttgaaggtatgcatggtgacatgggacaaaatcaa
agattaaatacacttaggaaatttaaagaaggtactttagattttttagttgctacagat
gttgctgctagaggtattgatgttgatgatgtatcgcatgtaataaactatgatctacct
caagatatggagtcttatgtgcatagaattggtagaactggaagagctaacaaagaaggt
attgcttattctcttgtaactcctagagaatatattatgataaagcagttagaaaaattt
acgaaaagtaaaataaagagaaaagaaatccctactctagatgaaatttttgaagctaaa
tataacagtatgttaaaggatgtaaaaaatactctagagcaaaatgattataaagatttt
atccctgtagcaacaggattagatgatgattataatttagttgatgtagctgctgctctt
atgaaaatgcttttcgatagagaatttaattttgattataatgaagatttatcagtaaaa
tcaactaagcctgtaagattatttttatctgtaggtagaattgataaagttactcctgtt
aaaatactcaatttcttagaagaaacttctgatatagatgtaaatgaagttggagacatc
gatatatttgataaattcacatttatagatctacctgaagatttattggatgcagtttta
tccagaagcagtggtaagagattaaatggtagaagagttaatatagaagttgctaaaagc
aaaaataatcattctcgtaaataa
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