Comamonas squillarum: N4T19_01715
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Entry
N4T19_01715 CDS
T10846
Name
(GenBank) sigma-70 family RNA polymerase sigma factor
KO
K23514
RNA polymerase sigma-19 factor, ECF subfamily
Organism
csqu Comamonas squillarum
Pathway
csqu02020
Two-component system
Brite
KEGG Orthology (KO) [BR:
csqu00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
N4T19_01715
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
csqu03021
]
N4T19_01715
Transcription machinery [BR:
csqu03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
N4T19_01715
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Sigma70_r4_2
Sigma70_r2
Sigma70_r4
HTH_23
Sigma70_ECF
HTH_38
GerE
DUF6362
HTH_IclR
HTH_24
HTH_11
Xre-like-HTH
HTH_31
HTH_20
HTH_50
HTH_32
HTH_AsnC-type
HTH_DeoR
HTH_40
HTH_Tnp_4
HTH_36
Motif
Other DBs
NCBI-ProteinID:
UXC18878
UniProt:
A0ABY5ZY10
LinkDB
All DBs
Position
complement(382730..383296)
Genome browser
AA seq
188 aa
AA seq
DB search
MSAILDIQLLYTGHHQWLQQRLQHRLGNAADAQDMAADTFVCVLTSATPPEAIREPRAFL
TTIAKRLLINHWRRRDLERSYLEALGAQPEPLMPSPEELAVLQETLAHVAHALDGLPLPA
QQAFLLSQLDGLGYEAIATRLGISHSTVRRHMAEGFRRIALALARQDAGITAPVRNAAPA
MATRLSAG
NT seq
567 nt
NT seq
+upstream
nt +downstream
nt
atgtctgccattctcgacatccagcttctctacaccggccaccaccaatggctgcagcag
cgcctgcagcaccggctcggcaatgccgccgatgcgcaggacatggcggccgacaccttt
gtctgcgtgctcaccagtgccacgccgcccgaggccatccgtgagccccgggcgtttttg
acgaccattgccaagcggctgctgatcaaccactggcgccgccgcgacttggagcgcagc
tacctcgaagcgctgggcgcccagcccgagccgctgatgccctcgcccgaagagctggcg
gtgctgcaagagacgctggcccatgtggcccatgcgctcgacggcctgccgctgccggcc
cagcaggcctttttgctcagccagctcgatggtctgggctatgaggccatcgcaacgcgg
ctgggcatctcgcacagcaccgtgcgccgccatatggcagagggctttcgccgcattgcg
ctggccctggccaggcaggatgccggcattaccgcaccagtgcgcaatgcagcacctgcg
atggcgacccgcctgagcgctggatga
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