Comamonas squillarum: N4T19_01785
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Entry
N4T19_01785 CDS
T10846
Symbol
ligD
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
csqu Comamonas squillarum
Brite
KEGG Orthology (KO) [BR:
csqu00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
N4T19_01785 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
csqu03400
]
N4T19_01785 (ligD)
Enzymes [BR:
csqu01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
N4T19_01785 (ligD)
DNA repair and recombination proteins [BR:
csqu03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
N4T19_01785 (ligD)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_C
DNA_ligase_A_M
DNA_primase_S
RNA_ligase
Motif
Other DBs
NCBI-ProteinID:
UXC18891
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All DBs
Position
393559..396081
Genome browser
AA seq
840 aa
AA seq
DB search
MPSSLDKYQAKRNFAKTPEPADGGESVAGQLQFVIQKHWASHLHYDLRLELDGVMKSWAV
PKGPSLDPSHKRMAVQVEDHPISYNRFEGQIPAGHYGAGKVIVWDKGLWLPLADPHEGYR
KGKLHFELQGHKLGGRWTLVRMKGKEGERQPPWLWIKEADDFARPAGELDIVSARPDSVA
SVQRAAVAQLAAAPAAQRGTTRKAKTRASALPTTMAPQLAVLADAPPPNPQDWAWELKLD
GYRMAARKQGRKLALWTRNGKDWTAKMPALAAALQHVQLNDAWLDGEVVALNDKGLPDFQ
RLQNAFDGEGTTDLVYYLFDLMFANGQDLRAQPWQARRQALRAALRAALDASPGLGNSVR
ISEAFAGDPAQLLASACALGMEGIVGKRKDAAYREGRTADWIKLKCGQRQEFVIGGYTRP
QGTRTGLGSLLLWMHDSGGQLVYAGNVGTGFTEASLRALTAQLQNIKTRTCPFVDPKRID
YAAIWVRPELVAEIAFAGWTGQGRVRHAVFHGLRGDKPANQITRERTTTMPVCKITPSAT
GGIEVSHGERIMDASTGVTKLDVVRYYEQVAPLMMEHLQDRPTSLVRTPDGVGGEHFFQK
HLQARAMAGIVQLPQSLDPEHPPLLAIARAEGLVQAAQFNVVEFHTWNARRDKILRPDRM
TFDLDPGEGVAWPAVQEAAELVRVLLQELGLEPFLKTSGGKGLHLVVPIQRRHDWDTVKG
FSKAIVQHLAATVPQRFVAKSGPQNRKGKIFVDYLRNGWGATTVSAWSLRARPGMGVSVP
IGWSELDQVSSGAHWGIESIEARFRKGNAPWDGYAQAAVSITAAMKRLADAGSSSGDGWA
NT seq
2523 nt
NT seq
+upstream
nt +downstream
nt
atgcccagttcattggacaaataccaagccaagcgcaactttgccaagacccctgagccg
gccgacggcggcgaatcggtcgcgggccagctgcagtttgtcatccagaaacactgggcc
agccatttgcactacgacctgcggctcgagctcgatggcgtgatgaaaagctgggcggtg
cccaaagggcccagcctggaccccagccacaagcgcatggccgtgcaggtggaagaccac
ccgatttcctacaaccgctttgagggccagatccccgccggccactatggcgcgggcaag
gtgatcgtctgggacaaaggcctgtggctgccgctggctgacccgcacgagggctaccgc
aagggcaaactccattttgagttgcagggccacaagctgggcgggcgctggaccctggtg
cgaatgaagggcaaggagggcgagcgccaaccgccttggctttggatcaaggaagcggac
gactttgcccgcccggctggcgagttggacattgtcagcgcccggcccgacagcgtggcc
agtgtgcagcgggcggcggtcgcccaactcgctgcagcgcctgcggcccagcgcggcacc
acccgcaaagcgaaaacccgagcctctgccttgcccaccacgatggcgccgcagctggcc
gtgctcgctgatgcgccgcctccgaacccccaggactgggcctgggagctcaagctcgat
ggctaccgcatggcagcgcgcaaacagggccgcaagctggcgctgtggacccgcaatggt
aaggactggacggccaagatgccggcgttggcagcggccctgcagcatgtgcagctcaac
gacgcctggctggatggcgaggtggtagcgctcaatgacaaagggctgcccgattttcag
cggctgcaaaacgcgtttgatggggagggtacgaccgaccttgtctattacctgtttgac
ctgatgtttgccaatggtcaggatttgcgtgcccagccctggcaggcgcggcgccaggcg
ctgcgggcggcgctgcgggcggcgctggatgccagcccgggcttgggcaacagcgtgcga
atcagtgaggcttttgccggcgacccggcacaactgttggcctcggcctgcgcgctgggc
atggagggcattgtcggcaagcgcaaggatgccgcctaccgcgagggccgcacggcggac
tggatcaagctcaaatgcggccagcgccaggagtttgtcatcggcggctacacgcgcccc
caaggcacgcgaaccggtctgggctcattgctgctgtggatgcacgacagcggcggccaa
ctggtctatgccggcaatgtgggcaccggttttaccgaggccagcctgcgcgcgctgacg
gcgcaactgcaaaatatcaagactaggacatgcccttttgtggaccccaagcgcattgac
tatgcggccatctgggttcgtcccgagctggtcgcagaaatcgcctttgccggctggacc
ggccagggccgggtgcgccatgcggtcttccatggcttgcgcggggacaagcccgccaac
cagatcactcgggagagaaccaccaccatgcctgtttgcaagataacccccagcgctacc
ggcggcattgaggtcagccatggagagcgcatcatggacgccagcacgggcgtgaccaag
ctggacgtggtgcgctactacgagcaggtggcgccgctgatgatggagcacctgcaagac
cggcctacctcgctggtgcgcacccccgatggggtggggggcgaacatttctttcagaag
cacctgcaggcccgtgccatggccggcatcgtgcaactgccccagtcgctcgatccggaa
cacccgccgctgctggccattgcccgagcggagggcctggtccaggcggcgcagttcaat
gtggtcgagttccacacctggaacgccaggcgcgacaagattctgcggcccgaccgcatg
acctttgacctggacccgggagagggcgtggcctggccggcggtgcaggaggcggccgag
ctggtgcgggtgctgctgcaggagcttggcttggagccctttctcaaaaccagcggcggc
aagggcctgcacttggtggtaccgatccagcgccgccatgactgggataccgtcaagggc
ttttccaaggcgatcgtgcagcacctcgcagccaccgtgccccagcgctttgtggccaag
agcggcccgcaaaaccgcaagggcaagatctttgtcgactacctgcgtaatggctggggc
gccacgacggtcagtgcctggtcgctgcgggcgcggccgggtatgggtgtgtcggtaccc
atcggctggtcggagctggaccaggtcagcagcggcgcacactggggcattgagtccatt
gaagcgcgctttcgcaagggaaatgcaccctgggatggctatgcccaagcggcggtgtca
attaccgcggcaatgaagcggctcgctgacgcaggctcatcatcgggtgatggatgggct
tga
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