Comamonas squillarum: N4T19_03650
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Entry
N4T19_03650 CDS
T10846
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
csqu Comamonas squillarum
Pathway
csqu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
csqu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
N4T19_03650
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
csqu03019
]
N4T19_03650
Enzymes [BR:
csqu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
N4T19_03650
Messenger RNA biogenesis [BR:
csqu03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
N4T19_03650
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Utp25_C
Motif
Other DBs
NCBI-ProteinID:
UXC19233
UniProt:
A0ABY6A0L4
LinkDB
All DBs
Position
complement(764951..766732)
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AA seq
593 aa
AA seq
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MNFEELNLAPAIVQAVREQGYDTPTPIQAQAIPLVLQGCDLLAGAQTGTGKTAAFTLPML
QRLTQSEGSRNKWGNKAIRALILAPTRELAAQVEENVRLYATHLDIKSTVIFGGVGMNPQ
IDRIKKGVDVLVATPGRLLDLQQQGFLDLSTVEILVLDEADRMLDMGFIHDVKKVLAMVP
KDKQSLLFSATFSDEIRELASGLLKNPQSIQVTPRNTTVQRIKQVIHPVGRGKKKQVLLH
IVQENNWSQVLVFTRTKFGANNVAEYLSKNGVSAMALHGNKSQSARTQALEGFKSGDLRA
LVATDIAARGIDIDELPNVVNYEIPNVSEDYVHRIGRTGRAGREGNAVSLVCMDEEGFMM
DIERFTKQDIPVQVLEGFGPEEGEKAEPIAMGRQTIWGGAGKAPGRDVMQAAAKAARQEM
MERVRTNKVARGPGGNAGGGQRGGNAKRSPGPRAERAEGGAEFGGEGLDQARREQRPPRR
DGRQGPRHPSGEARGPQRASQGPRQAGPGASRGPRQDSERQPRADAHLGTQFGGTVDGRD
HRRSGAAQPDPMRTSVDSMAERGRRGGFGGGNRNGGGGGGGAGRGGRNHSFSR
NT seq
1782 nt
NT seq
+upstream
nt +downstream
nt
atgaactttgaagaactgaatctggcacctgccattgtgcaggctgtgcgcgaacaaggc
tacgacacgcctacccctatccaagcccaggctatcccgctcgtgctacaaggctgcgat
ttgctggccggcgcacagacgggcaccggcaagacggccgctttcacgctgcccatgctc
cagcgcctgacccaatctgaaggcagccgcaacaaatggggcaacaaggccatccgcgca
ctgattctggcccccacccgcgagctggccgcccaggtcgaagaaaacgtgcgcctctac
gccacgcacctggacatcaagtccaccgtcatctttggtggcgtgggcatgaacccacaa
atcgaccgcatcaaaaagggcgtcgatgtgctggtggccactcccggccgtctgctcgat
ctgcagcagcaaggctttctggacctgtctacggtcgagatcctggtgctcgacgaagct
gaccgcatgctggacatgggtttcatccacgacgtgaaaaaagtgctggcgatggtgccc
aaggacaagcaaagcctgctgttctcggccacgttcagcgatgaaatccgcgagctggcc
agtggcctgctgaagaacccgcagtccatccaggtgacgccgcgcaacaccacggtgcag
cgcatcaagcaagtgatccaccctgtgggccgcggcaagaaaaagcaggtgctgctgcac
atcgtgcaggaaaacaactggagccaggtgctggtcttcacccgcaccaagtttggcgcc
aacaatgtggccgaatacctcagcaagaatggcgtctcggccatggcgctgcacggcaac
aagagccaaagcgcccgcacccaggccctcgaaggcttcaagtccggcgatctgcgcgcg
ctggtcgccaccgatattgcagcacgcggtatcgacattgatgaattgcccaacgtggtc
aactacgagatccccaatgtctcggaagactacgtgcaccgcatcggccgcaccggccgc
gctggccgcgaaggcaatgccgtgagcctggtgtgcatggatgaagaaggcttcatgatg
gacatcgagcgcttcaccaagcaggacattcctgtgcaggtgctcgaaggctttggtccg
gaagaaggtgaaaaggccgaacccatcgccatgggccgccagaccatctggggcggcgca
ggcaaggcccccggccgtgatgtgatgcaggcagcggccaaggctgcccgccaggaaatg
atggaacgcgtgcgcaccaacaaggtcgctcgcggccctggtggcaatgcaggcggcggc
cagcgcggcggcaatgccaagcgcagccccggcccacgcgctgaacgcgccgaaggcggt
gcagagtttggcggcgaaggcctggaccaggcacgccgcgagcagcgcccaccacgccgc
gacggccgccaaggcccacgccacccctcgggtgaggcgcgtggcccacagcgcgcgtcg
caaggtccacgccaggcgggccccggtgcaagtcgcggcccgcgccaggacagcgaacgc
cagccacgcgctgatgcccacctgggcacgcagtttggcggcacggtcgatggccgtgac
catcgccgcagcggcgcggcccagcccgatccgatgcgcaccagcgtggacagcatggcc
gagcgcggccgccgcggcggctttggcggtggcaaccgcaatggcggcggcggcggtggt
ggtgcaggccggggcggccgcaaccactccttctcgcgatag
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