Comamonas squillarum: N4T19_09980
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Entry
N4T19_09980 CDS
T10846
Symbol
recJ
Name
(GenBank) single-stranded-DNA-specific exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
csqu Comamonas squillarum
Pathway
csqu03410
Base excision repair
csqu03430
Mismatch repair
csqu03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
csqu00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
N4T19_09980 (recJ)
03430 Mismatch repair
N4T19_09980 (recJ)
03440 Homologous recombination
N4T19_09980 (recJ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
csqu03400
]
N4T19_09980 (recJ)
DNA repair and recombination proteins [BR:
csqu03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
N4T19_09980 (recJ)
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
N4T19_09980 (recJ)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
N4T19_09980 (recJ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DHH
RecJ_OB
DHHA1
Motif
Other DBs
NCBI-ProteinID:
UXC20410
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All DBs
Position
2132052..2133767
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AA seq
571 aa
AA seq
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MKILARDIPPRTVWALEQAGVHPLLARLFAARGVQAAAELDDGLAQLLPPAGLLGTREAA
LLLADAIGRQQRICVVADYDCDGATACAVALRGLRMLGAQQVSYLVPDRVVDGYGLTAAI
AERVHQQGAQVLVTVDNGIASVDGVARAKALGMTVIVTDHHLPAATLPAADAIVNPNQPG
CSFASKAMAGVGVMFYVLMALRAELRDRGAFADMAQPRLDSLLPLVALGTVADVVKLDAN
NRRLVAQGLRRIRAGHMPPGLGALFSAASRRAATASTFDFGFALGPRINAAGRLADMTIG
IECLLTDDTLLADTLARQLDAINRERRDIETGMREHAMLLAEALFEEGTEPPPAVSVFDP
DFHEGVVGIVASRIKDKLHRPSFVFAASSAPGHEHELKGSGRSIPGFHLRDALDLVAKRH
PGVLIKFGGHAMAAGCTIALDDFEVFEQALAQVAQEWLDERTLTRQLETDGPLPVQFRHA
ETVDTLNSQVWGQGFAPPTFSEELEIVSQRLVGEKHLSLKLRHHGEMVDGIWFGHTEPLP
AKVLLAYRLDINEWQGQRKLQFLVEGAQLPS
NT seq
1716 nt
NT seq
+upstream
nt +downstream
nt
atgaaaattctggcccgagatattcccccgcgcaccgtctgggcgctggagcaggcaggc
gtgcacccgctgctcgcccgcctgtttgccgcgcgcggtgtgcaggccgctgctgagctg
gacgatggcctggcgcagctgctgccgcccgctggcctgctgggcacgcgcgaggcggcg
ctgctgctggccgatgcgattggccgccagcagcgcatctgcgtcgtggccgattacgac
tgcgacggcgccaccgcctgcgcagtggccctgcgcggcctgcgcatgttgggcgcccag
caggtcagctacctggtgcccgaccgcgtggtcgatggctatggcctgacggcagcgatt
gccgagcgcgtgcaccagcaaggcgcgcaggtgctggtgaccgtggacaacggcattgcc
agcgtggacggcgtggcccgcgccaaggcgctgggcatgacggtgatcgtcaccgaccac
cacctgccggcagccaccctgccggcggccgatgccatcgtcaatcccaaccagcctggc
tgcagctttgccagcaaggccatggccggtgtcggcgtgatgttctatgtgctgatggcc
ttgcgcgctgagttgcgcgatcgcggtgcctttgccgacatggcccagccgcgcctggac
agcctgctgccgctggtggcactgggcaccgtcgccgatgtggtcaagctcgatgccaac
aaccgccgcctggtggcccagggcctgcgccgcattcgcgccggccatatgccccctggc
ctgggcgcactcttctcggccgccagccggcgcgcggccaccgccagcacctttgacttt
ggttttgcgctgggcccgcgcatcaatgccgccgggcgcctggccgacatgaccatcggc
atcgaatgcctgctgaccgacgacaccttgctggccgacaccctggcgcgccagctcgac
gccatcaaccgcgagcgccgcgatatcgagacgggcatgcgcgagcacgcgatgctgctg
gcagaggccttgtttgaagaaggcaccgagccgccaccggctgtgagcgtgtttgacccg
gacttccacgaaggcgtggtgggcatcgttgcctcgcgcatcaaggacaagctgcaccgc
ccaagctttgtgtttgccgccagcagcgcaccgggccatgagcatgagctcaagggctcg
ggccgctcgatccccggcttccatctgcgcgatgcgctggacctggtggccaagcgccac
ccaggcgtgctgatcaagttcggcggccatgcgatggcggcgggctgcacgattgcgctg
gacgatttcgaggtgtttgagcaggccctcgcccaggttgcgcaggaatggctcgatgag
cgcacgctcacccgccagctggagaccgatggcccgctgccggtgcagtttcgccatgcc
gagaccgtggacacgctcaacagccaggtctggggccagggctttgcgccgcccaccttc
agcgaagagctggagatcgtcagccagcgcctggtgggggaaaaacatttgtcgctgaag
ctgcgccaccatggcgagatggtggacggcatctggtttggccataccgagccactgccg
gccaaggtgctgctggcctaccggctggacatcaatgaatggcagggccagcgcaagctg
cagttcctggtcgaaggcgcgcagctgcccagctga
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